Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,765,234 |
G→A |
G129G (GGG→GGA) |
yibJ → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,765,234 | 0 | G | A | 100.0%
| 122.2
/ NA
| 42 | G129G (GGG→GGA) | yibJ | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (18/24); total (18/24) |
GCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT > NC_000913/3765201‑3765305
|
gctggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCg < 2:2587249/73‑1 (MQ=255)
gctggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCg > 1:5537101/4‑76 (MQ=255)
ctggggCGGTATATCACTCAGGATCCGATTGGACTGGAGGGGGGGTGGGATTTTTATCAGTATCCGTTGAATCCgg > 1:3365677/3‑76 (MQ=11)
ctggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCgg < 2:2499961/74‑1 (MQ=255)
tggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt > 2:4188765/2‑76 (MQ=255)
tggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt > 1:867635/2‑76 (MQ=255)
tggggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGt > 1:5708488/2‑76 (MQ=255)
gggCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCa > 2:3662146/1‑76 (MQ=255)
gCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATa > 2:1320019/1‑76 (MQ=255)
cGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTCTCCGTTGAATCCGGTCATaa < 1:4735134/76‑1 (MQ=14)
cGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaa > 2:444744/1‑76 (MQ=255)
ggTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATaaa > 1:3719085/1‑76 (MQ=255)
gtttatCATGCAGGATCCGATTGGACTGACGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt < 2:3863352/73‑1 (MQ=14)
gTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt < 2:830861/76‑1 (MQ=255)
gTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt > 1:476782/1‑76 (MQ=255)
gTATATCACTCAGGATCCGATTGGACTGAAGGGGCGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt > 1:4589135/1‑76 (MQ=14)
gTATAACACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAAt < 2:969126/76‑1 (MQ=255)
tataTCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATg > 2:3126223/1‑76 (MQ=255)
tataTCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATg < 1:4342179/76‑1 (MQ=255)
tataTCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATg > 2:1873170/1‑76 (MQ=255)
atatCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGt < 2:2297284/76‑1 (MQ=255)
tctcTCAGGATCCGATTGGACTGCAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa < 1:629672/73‑1 (MQ=17)
tCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa > 1:979030/1‑76 (MQ=255)
tCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGa < 2:2305659/76‑1 (MQ=255)
cACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt < 2:5412638/76‑1 (MQ=255)
aCTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc < 2:1385932/76‑1 (MQ=255)
aCTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc < 1:4065059/76‑1 (MQ=255)
cTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATcc < 2:2147451/76‑1 (MQ=255)
cAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGc < 2:979030/76‑1 (MQ=255)
aGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCa > 2:1651287/1‑76 (MQ=255)
ggATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATACGTTGAATCCGGTCATAAATGTAGATCCGCaa > 1:2614220/1‑76 (MQ=255)
gATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg < 2:3792459/76‑1 (MQ=255)
gATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg < 1:3819729/76‑1 (MQ=255)
tCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGt > 1:5712886/1‑76 (MQ=255)
tCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGt < 1:435598/76‑1 (MQ=255)
cGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt < 2:1249261/76‑1 (MQ=255)
cGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGttt < 2:3719085/76‑1 (MQ=255)
gATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTg > 2:1563639/1‑76 (MQ=255)
gATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTg < 1:3583561/76‑1 (MQ=255)
aTTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTgg < 2:3067474/76‑1 (MQ=255)
ttGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt < 1:4545500/76‑1 (MQ=255)
ttGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGt < 1:4314990/76‑1 (MQ=255)
|
GCAGGGGCGGTATATCACTCAGGATCCGATTGGGCTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGT > NC_000913/3765201‑3765305
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
