Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 94.4%
| 218.0
/ 11.3
| 108 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (4/2); new base C (54/48); total (58/50) |
| Fisher's exact test for biased strand distribution p-value = 6.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 94.4%
| 215.8
/ 11.3
| 108 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (4/2); new base C (54/47); total (58/50) |
| Fisher's exact test for biased strand distribution p-value = 6.85e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 115 total aligned reads displayed.
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT > NC_000913/3957017‑3957155
||
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCACTCACCCCG‑‑A‑‑c > 1:5579258/1‑76 (MQ=255)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑cc < 1:5063904/76‑2 (MQ=255)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑cc < 1:4062646/76‑2 (MQ=255)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑A‑‑cc > 2:2937085/1‑75 (MQ=255)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc > 1:1655960/1‑74 (MQ=255)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:1947871/76‑3 (MQ=255)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑cccc > 2:1019727/1‑73 (MQ=255)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctc > 1:3375651/1‑76 (MQ=255)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctc > 1:2443665/1‑76 (MQ=255)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctctc > 2:5006736/1‑74 (MQ=255)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑A‑‑Ccctctcc > 2:2294856/1‑73 (MQ=38)
cTATATGACAGATATGATTCGCATTGCTGTTGCGGGTTAAGTGCGCGCTCATGCCCTCGCCCCG‑‑ACCCTCTCCcac < 1:3104484/76‑1 (MQ=255)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca > 2:5185836/1‑76 (MQ=25)
tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca > 1:3407468/1‑76 (MQ=25)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagg < 1:5150382/76‑1 (MQ=25)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagg > 1:1756682/1‑76 (MQ=25)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCATaggg < 2:2911017/76‑1 (MQ=25)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggga > 1:4032077/1‑76 (MQ=25)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCGCACCCCG‑‑ACCCTCTCCCACagggg > 1:396461/1‑75 (MQ=25)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga < 1:568118/76‑1 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACcgggagag > 1:2660181/1‑76 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagag > 2:360313/1‑76 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagag < 1:2373068/76‑1 (MQ=21)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑TCCCTCTCCCACagggagagg < 2:5078886/76‑1 (MQ=18)
aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagagg < 1:170736/76‑1 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagaggg > 1:838738/1‑76 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagaggg > 1:540589/1‑76 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggagaggg > 1:2320191/1‑76 (MQ=21)
atGAAAGGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAgggagagggaga < 2:154338/76‑1 (MQ=18)
tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaa < 1:2230881/76‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaaa < 2:1252669/76‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGaaa > 2:2744983/1‑76 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACCGGGAGAGGGAGaaaa > 1:3572536/1‑76 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGTGAGGGAGaaaa > 2:2085213/1‑76 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 1:5241498/76‑1 (MQ=18)
aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAac < 1:4353170/76‑1 (MQ=18)
aCGTATAGCTGTTGCGGGTTAAGTCCGCGCTGATGCCCTCCCCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAaca < 1:751280/76‑1 (MQ=14)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAacac < 2:2637887/76‑1 (MQ=17)
gTATTGCTGTTGCGGGTTAAATGCGCGCCGATGCCCTCACCCCG‑‑ACCCTCTCACACAGGGAGAGGGAGAAAacaac > 2:181878/1‑74 (MQ=17)
tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑CCCCTCTCCCACAGGGAGAGGGAGAAACCACTc < 2:5416311/76‑1 (MQ=14)
tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACCGGGCGAGGGCGAAAACACTc > 2:360567/1‑76 (MQ=17)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagg > 1:4672413/1‑56 (MQ=17)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑a‑a > 2:2183171/1‑76 (MQ=17)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑a‑a > 1:4098605/1‑76 (MQ=17)
gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGTGGGAGAAAACACTC‑A‑A‑gg > 1:667915/1‑75 (MQ=17)
gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑gg > 2:3331788/1‑75 (MQ=17)
gCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑gg > 1:2672247/1‑75 (MQ=17)
cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggc > 1:2894758/1‑74 (MQ=17)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggcc > 2:3383084/1‑73 (MQ=17)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggcc > 2:4053990/1‑73 (MQ=17)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggcc < 1:2029390/76‑4 (MQ=17)
tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑ggcc < 2:2672247/76‑4 (MQ=17)
tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtc < 2:5180557/76‑1 (MQ=14)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtct < 1:1389653/76‑1 (MQ=14)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtct < 1:3918899/76‑1 (MQ=14)
gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTtct > 1:3556923/1‑76 (MQ=14)
cGGGTTAAGTGCGCGCTGATGGCCCCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGGAAACACACAA‑A‑GCCGtctc > 1:3648481/1‑76 (MQ=2)
gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCCCCGGGGGCGGGAGGAAACACTCAA‑A‑GCCCTCTcc > 1:2448633/1‑76 (MQ=9)
gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggga > 1:1013914/1‑48 (MQ=11)
gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTcc > 1:3834939/1‑76 (MQ=14)
ggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 2:5838529/76‑1 (MQ=14)
ggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCt < 1:494626/76‑1 (MQ=14)
tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTgta < 1:2826526/76‑3 (MQ=14)
tAAGGGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCACAGGGAGAGGGGGACAACACTC‑ACA‑GCGTTCTCCTggc > 2:63938/1‑75 (MQ=2)
aattGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgag < 2:2108225/73‑1 (MQ=14)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGaag > 1:5059748/1‑76 (MQ=14)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACGCTGTCGCGCGGGGGGAGGGAGAAAACACTC‑A‑GGGCCTTCTCCTGgaga < 2:453276/76‑1 (MQ=9)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgaga < 2:184316/76‑1 (MQ=14)
gTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGaa < 2:5185756/76‑1 (MQ=14)
gTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGaa < 1:740381/76‑1 (MQ=14)
tGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGgagacg > 2:1598999/1‑74 (MQ=14)
tGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAg < 2:4408198/76‑1 (MQ=17)
gcgcgcTGATGCCCTCACCCGT‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAgg < 1:2184182/76‑1 (MQ=17)
cgcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGc < 1:5745061/76‑1 (MQ=17)
gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGcc > 1:1500671/1‑76 (MQ=17)
gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGcc > 1:3271886/1‑76 (MQ=17)
gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGcc > 1:419565/1‑76 (MQ=17)
gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGcc > 1:4704333/1‑76 (MQ=17)
cgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCt > 2:1008446/1‑76 (MQ=17)
cgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCt > 2:4567663/1‑76 (MQ=17)
cgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCt < 2:4455165/76‑1 (MQ=17)
gcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCCTCTCCTGGCGAAGGccct > 2:2552597/1‑74 (MQ=14)
gcTGATGCCCTCACCCAG‑‑ACCCTCTCCCACACGGAGAGGGAGAAAACACAC‑A‑AGGCCTTCTCCGCCAGAAGGCCta > 2:2485822/1‑75 (MQ=2)
cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTg < 2:5258299/76‑1 (MQ=18)
cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTg > 2:3072015/1‑76 (MQ=18)
tGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGc < 2:4587282/76‑1 (MQ=18)
gATGCCCTCACCCCGGCG‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑CGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:5579256/76‑1 (MQ=17)
gATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCt > 2:4392837/1‑76 (MQ=18)
gATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:3334456/76‑1 (MQ=18)
gATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCt > 2:4500325/1‑76 (MQ=18)
aTGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCtn < 1:2937085/76‑2 (MQ=18)
cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGCAGGCCTTGCTATTa > 2:5566711/1‑76 (MQ=18)
cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTa > 1:753237/1‑76 (MQ=21)
cccTCACCCCG‑‑ACCCTCGCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 2:5179180/76‑1 (MQ=21)
cTCACCCCG‑‑ACCCTCTCCCACAGGGAGCGGGAGAAAACACTC‑A‑ACGCCTTCTCCTGGAGCAGGCCTTGCTACTAGt > 2:2920327/1‑76 (MQ=18)
cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt > 1:4638063/1‑76 (MQ=21)
cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt > 2:5453732/1‑76 (MQ=21)
cTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:1019727/76‑1 (MQ=21)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑ACG‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt > 1:4734886/1‑76 (MQ=21)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑AGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:3556923/76‑1 (MQ=21)
||
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑A‑A‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT > NC_000913/3957017‑3957155
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
