Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,978,702 |
C→T |
S68F (TCC→TTC) |
yifK → |
putative amino acid/amine transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,978,702 | 0 | C | T | 99.3%
| 452.1
/ NA
| 144 | S68F (TCC→TTC) | yifK | putative amino acid/amine transport protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (81/62); total (81/63) |
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
Only 100 of 147 total aligned reads displayed.
TCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCAC > NC_000913/3978629‑3978774
|
cGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCtg < 2:5041507/76‑2 (MQ=255)
cGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTc > 1:5493029/1‑76 (MQ=255)
aTTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGaa < 1:573232/76‑1 (MQ=255)
aTTGTGGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGaa < 2:1175739/76‑1 (MQ=255)
ttgttgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAac > 2:4951757/1‑76 (MQ=255)
tgttgtCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAacc < 1:1918938/76‑1 (MQ=255)
tgttgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAacc > 1:262409/1‑76 (MQ=255)
gttgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGCaccg > 2:310550/1‑76 (MQ=255)
gttgGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccg > 1:4483754/1‑76 (MQ=255)
ggCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggtt > 2:4494682/1‑76 (MQ=255)
ggCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggtt < 1:3510138/76‑1 (MQ=255)
gtcTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATCGGCGAAATGTTGTTCCTCGAaccggtta < 2:2547953/74‑1 (MQ=255)
gCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttc > 2:4775524/1‑75 (MQ=255)
cTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttacc < 2:4143168/76‑1 (MQ=255)
tataTCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccg < 1:2064976/76‑1 (MQ=255)
tataTCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccg < 2:2433838/76‑1 (MQ=255)
atatCATCGCGGGGCTGTTCGTCTTTTTCATCATGCGTTCAAGGGGCGAAATGTTGTTCCTCGAaccggttaccgg < 2:5390483/76‑1 (MQ=255)
tatCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggt > 1:972166/1‑76 (MQ=255)
atcatcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccggtt > 1:962224/1‑76 (MQ=255)
tcatcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttc > 1:2949977/1‑76 (MQ=255)
gtgtcGCCGGGCTGTTCGTCTTTTTCATCGTGCGTTCAATGGGCGACATGTTGTTCCTGGAACCGGGTACCGgttc < 2:1837983/73‑1 (MQ=255)
catcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcg > 2:5467442/1‑76 (MQ=255)
atcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgt > 1:3676253/1‑76 (MQ=255)
atcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgt < 1:5252828/76‑1 (MQ=255)
atcGACGGGCTGTTCGTCTTTTTCATCATGCGTTCAATCACAGAAATGTTGTTACTCGAACAGGTTACCGgttagt > 2:2458897/1‑76 (MQ=255)
tcGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgtt < 1:5701000/76‑1 (MQ=255)
cGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGgttcgttc > 1:3359381/1‑76 (MQ=255)
ggcGGGCTTTCCGTCTTTTTCGTCATGCGTTCATTGGGCGAGATGTTGTTCTTCGAACCGGTTTCCGGttcgttcg < 2:2771123/74‑1 (MQ=255)
gCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGttcgttcg < 1:4631931/76‑1 (MQ=255)
gCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGttcgttcg > 2:4371083/1‑76 (MQ=255)
gCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGttcgttcg > 2:389455/1‑76 (MQ=255)
gCCGGGCTGTTCGTCTTTTTCATCATGAGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGgttgttcg > 1:78184/1‑76 (MQ=255)
cGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCTGTTACCGGTTCGTTCGcc > 1:3539871/1‑76 (MQ=255)
gggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCg > 1:4946728/1‑76 (MQ=255)
gggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCg > 1:1793204/1‑76 (MQ=255)
gggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCg < 1:5153512/76‑1 (MQ=255)
gggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCg > 1:4005041/1‑76 (MQ=255)
gggCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCg > 1:2562665/1‑76 (MQ=255)
gCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGtt < 2:5493027/76‑1 (MQ=255)
tGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTa > 2:1678110/1‑76 (MQ=255)
gTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAt < 1:3612735/76‑1 (MQ=255)
gTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTAt > 2:4208207/1‑76 (MQ=255)
ttCGTCTTTTTCATCATGCGTACAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATg > 2:3760807/1‑76 (MQ=255)
tCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgc < 2:442340/76‑1 (MQ=255)
tCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgc > 1:4733138/1‑76 (MQ=255)
tCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgc < 1:3952739/76‑1 (MQ=255)
gTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgcgc > 1:4179430/1‑76 (MQ=255)
gTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATgcgc > 1:5572441/1‑76 (MQ=255)
tgtttttGAGCATGCGTTCAATGGGGGAGATGTTGTTCCTCGAACCGGTTACCGGTTTGTTCGCCGTTTATGCGCa < 2:78184/74‑1 (MQ=255)
tCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCa > 1:4423730/1‑76 (MQ=255)
cTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAaccggttaccgg > 2:5666760/1‑54 (MQ=255)
tttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATc > 2:3297239/1‑76 (MQ=255)
tttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATc < 2:5664519/76‑1 (MQ=255)
ttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCg < 2:4958071/76‑1 (MQ=255)
ttttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCg > 2:5005109/1‑76 (MQ=255)
ttCATCATGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGtt > 1:4901291/1‑76 (MQ=255)
ttCATCATGCGGTCAATGGGCGAAATGTTGGTCCTCGAACCGGTTACCGGATCGTTCGCACATTATGCGCAGCGtt > 2:2716245/1‑76 (MQ=255)
tcatcaTGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGttt > 2:1019961/1‑75 (MQ=255)
catcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTtat > 1:2192464/1‑76 (MQ=255)
atcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTtata > 2:2195287/1‑76 (MQ=255)
tcatGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTatat > 1:1160990/1‑76 (MQ=255)
tGCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAg > 2:1871001/1‑76 (MQ=255)
gCGTTCAATGGTCGACATGTTGTTCCTCGAACCGGTTCCCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc < 2:3639466/76‑1 (MQ=255)
gCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc > 2:1909688/1‑76 (MQ=255)
gCGTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGc > 1:1867533/1‑76 (MQ=255)
gTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCTGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGccc > 1:4004660/1‑76 (MQ=255)
gTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGccc > 1:4249479/1‑76 (MQ=255)
gTTCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGccc > 2:103745/1‑76 (MQ=255)
gTTCAATGGGAGAAATGTTGTTCCTCGAACCGGTTACCGGGTCGTTCGCCGTTTATGAGCATCGCTATATGAGccc > 1:4780262/1‑76 (MQ=255)
ttCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCg > 2:5090500/1‑76 (MQ=255)
ttCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCg < 2:843473/76‑1 (MQ=255)
ttCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCg > 2:2535528/1‑76 (MQ=255)
ttCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCg < 2:2244778/76‑1 (MQ=255)
ttCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCg > 2:1484568/1‑76 (MQ=255)
tCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGt > 2:3412836/1‑76 (MQ=255)
tCAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGt > 2:1441522/1‑76 (MQ=255)
cAATGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGtt < 2:463433/76‑1 (MQ=255)
aaTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTc > 2:2978813/1‑76 (MQ=255)
aaTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTc < 1:2923174/76‑1 (MQ=255)
aTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCt < 1:4668965/76‑1 (MQ=255)
aTGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCt > 1:1024366/1‑76 (MQ=255)
tGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCtt > 2:4628833/1‑76 (MQ=255)
tGGGCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCtt > 2:5290071/1‑76 (MQ=255)
gggCGAAATGTTGTTCCTCGAACCGGTTACCGgttcg < 1:2179702/37‑1 (MQ=39)
gggCGAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCttt < 2:1949053/76‑1 (MQ=255)
gAAATGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCt > 1:2079233/1‑76 (MQ=255)
gAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCt < 1:1032948/76‑1 (MQ=255)
aaaTGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTa > 1:722197/1‑76 (MQ=255)
aaaTGCTGTTCCTCGAACAGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTGCTATCGCTa > 2:3422372/1‑76 (MQ=255)
aaTGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAt < 1:322904/76‑1 (MQ=255)
aTGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCtgtt > 1:2642136/1‑73 (MQ=255)
aTGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAtc < 2:4370335/76‑1 (MQ=255)
aTGTTGTTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTCGCTAtc > 2:5075179/1‑76 (MQ=255)
gttgttCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAtctc < 1:1900727/76‑1 (MQ=255)
gttgttCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTAtctc > 2:1302961/1‑76 (MQ=255)
ttgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCa > 1:3006558/1‑76 (MQ=255)
ttgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCa > 1:2589580/1‑76 (MQ=255)
ttgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCa < 1:3519933/76‑1 (MQ=255)
ttgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCa < 1:4565558/76‑1 (MQ=255)
tgtTCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCAc < 2:3955650/76‑1 (MQ=255)
|
TCCGTATTGTTGGCCTATATCATCGCCGGGCTGTTCGTCTTTTTCATCATGCGTTCAATGGGCGAAATGTTGTCCCTCGAACCGGTTACCGGTTCGTTCGCCGTTTATGCGCATCGTTATATGAGCCCGTTCTTTGGCTATCTCAC > NC_000913/3978629‑3978774
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
