Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I1 R1
|
226 |
132.7 |
9745491 |
85.7% |
8351885 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,548,005 |
C→T |
G701D (GGT→GAT) |
malP ← |
maltodextrin phosphorylase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,548,005 | 0 | C | T | 98.4%
| 370.3
/ ‑6.5
| 121 | G701D (GGT→GAT) | malP | maltodextrin phosphorylase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (58/61); minor base G (2/0); total (60/61) |
| Fisher's exact test for biased strand distribution p-value = 2.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 134 total aligned reads displayed.
TCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAA > NC_000913/3547933‑3548077
|
tCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCaccttatctt > 1:4109857/1‑76 (MQ=255)
cgcaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCttt < 2:1810703/73‑1 (MQ=255)
cGAAGGCATGCGTATCGCCGGCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCttt > 1:4374679/1‑76 (MQ=255)
gAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttc > 1:356855/1‑76 (MQ=255)
agggCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttct < 2:2529271/74‑1 (MQ=255)
aaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttct < 1:1208418/76‑1 (MQ=255)
aaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttct < 2:4030774/76‑1 (MQ=255)
aaGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttct < 1:3863092/76‑1 (MQ=255)
aGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTAtctttctt > 2:795244/1‑76 (MQ=255)
ggCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttcttc > 2:134254/1‑76 (MQ=255)
gCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTttcttca < 2:2569987/76‑2 (MQ=255)
gCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTcc < 1:2330669/76‑1 (MQ=255)
cATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCg < 1:4573492/76‑1 (MQ=255)
aTGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc > 1:694770/1‑76 (MQ=255)
aTGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGc < 1:249099/76‑1 (MQ=255)
aTGCTTATCGCCGTCGCTGTATTTACCCCTTTCCAGCTCTTTCAAGACTTCGGCCAGCACCTTATCTTTCTTCCGc > 2:1596558/1‑76 (MQ=255)
tGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGcc < 1:1288980/76‑1 (MQ=255)
ggCTTAGCGCCGTCGCTGTATGTACCGATTTCCAGCTCTGTCAATACGCCGTCCAGCACCTTATCTTTCTTCCgac > 1:3867341/2‑74 (MQ=255)
gCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCa < 1:3330658/76‑1 (MQ=255)
gCTTAGCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCGATACTGCGTCCAGCACCTTATCTTTCTTCCGCCa < 2:181346/76‑1 (MQ=255)
gCTGATCGCCGTCGCTGCATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCa > 1:1192290/1‑76 (MQ=255)
ttATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCAtt < 1:2522245/76‑1 (MQ=255)
tATCGCCGTCTCTGTATTTGCCGCTTTCCAGCTCTTTCAATACTGCGTCCGGCACCTTCTCTTTCTTCCGCCAttt < 1:4159957/76‑1 (MQ=255)
aTCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTc > 2:2407822/1‑76 (MQ=255)
aTCGCCGTCGCTGTATTTACCGCGTTCGAGCGCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTc > 1:3471176/1‑76 (MQ=255)
tCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCa > 2:2702312/1‑76 (MQ=255)
gCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCGAGCACCTTATCTTTCTTCCGCCATTTCAcc < 1:4829386/76‑1 (MQ=255)
gCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCAcc < 1:2859094/76‑1 (MQ=255)
cGTCGCTGTCTTTCCCGCTTTCCAGCTCTTTCACTCCGGGGTCCAGCTCCTTATCTTTCTTCCGCCATTTCGCCgg < 2:3458829/76‑1 (MQ=255)
cGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCgg < 1:3292814/76‑1 (MQ=255)
cGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCgg > 1:1780525/1‑76 (MQ=255)
cGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCgg < 1:4565009/76‑1 (MQ=255)
gTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCggg > 1:3110702/1‑76 (MQ=255)
cGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCTCCGGGTc < 2:3000453/76‑1 (MQ=255)
cGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTc < 2:4747910/76‑1 (MQ=255)
gCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCg < 2:3734581/76‑1 (MQ=255)
gCTGTATTTACCGCTGTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCg < 2:3097592/76‑1 (MQ=255)
ccgTATTTACCGCTTTCCAGCGCTGTCAATACTGCGTCCAGCAACTGATCTTTCTTCCGCCATTTCACCGGGTCGt > 2:3197343/3‑76 (MQ=255)
cTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGt < 2:854212/76‑1 (MQ=255)
tGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCCCCTTATCTTTCTTCCGCCATTTCACCTGGTCGTa > 2:937083/1‑76 (MQ=255)
tGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTa < 1:4118973/76‑1 (MQ=255)
gTATTGACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAg < 2:4627906/76‑1 (MQ=255)
tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGc > 2:197372/1‑76 (MQ=255)
tATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGc > 1:1864252/1‑76 (MQ=255)
tttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt > 2:3988466/1‑76 (MQ=255)
tttACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCt < 1:2236257/76‑1 (MQ=255)
tACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCttt > 2:2772174/1‑76 (MQ=255)
tACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCttt > 2:4846451/1‑76 (MQ=255)
aCCGCTTTCCAGCTCTTTCTATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTg > 1:3638517/1‑76 (MQ=255)
aCCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTg < 1:773821/76‑1 (MQ=255)
aCCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTg > 1:3600812/1‑76 (MQ=255)
ccGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTgg < 1:2307926/76‑1 (MQ=255)
ccGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTgg < 2:3126858/76‑1 (MQ=255)
cGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGc < 2:2011102/76‑1 (MQ=255)
gCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCCCCGGGCCGCAGCCTTTCGcc > 2:4865192/1‑76 (MQ=255)
gCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGcc > 1:4480571/1‑76 (MQ=255)
cTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCa > 1:4028055/1‑76 (MQ=255)
tttCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAg > 1:25685/1‑76 (MQ=255)
cttCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAg < 1:287805/75‑1 (MQ=255)
ttCCAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGa > 2:2858267/1‑76 (MQ=255)
ccAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAt > 1:133505/1‑76 (MQ=255)
cAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAtt < 2:4270553/76‑1 (MQ=255)
cAGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAAtt < 2:204230/76‑1 (MQ=255)
aGCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTg > 1:2380844/1‑76 (MQ=255)
gCTCTTTCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGc > 1:4240638/1‑76 (MQ=255)
tttCCATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTAACCGGGTCGTCGCCTTTGGCAAGACTAGCCtta > 2:1550201/1‑75 (MQ=255)
tttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTc > 2:1515640/1‑76 (MQ=255)
ttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCa > 2:3374336/1‑76 (MQ=255)
ttCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCa > 2:248214/1‑76 (MQ=255)
tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCAc > 1:719126/1‑76 (MQ=255)
tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCAc < 2:2743180/76‑1 (MQ=255)
tCAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCAc > 2:1359589/1‑76 (MQ=255)
cAATACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACt < 1:3352949/76‑1 (MQ=255)
cgaCTGCGACCAGCCCCCTCGCTTTCTTCCGCCATTTCACCGAGACGACTCCTTTGGCCAGCATCGCCCTCACTTg > 2:113882/3‑76 (MQ=255)
aTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTg < 1:2168118/76‑1 (MQ=255)
aTACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTg > 2:121662/1‑76 (MQ=255)
tACTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGt < 2:1584407/76‑1 (MQ=255)
aCTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGtt > 1:1760744/1‑76 (MQ=255)
aCTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGtt > 1:2730363/1‑76 (MQ=255)
cTGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTc > 2:689750/1‑76 (MQ=255)
tGCGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTcc > 2:4188862/1‑76 (MQ=255)
cGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCAc < 1:2227163/76‑1 (MQ=255)
cGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCAc > 2:457641/1‑76 (MQ=255)
cGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCAc > 1:4279689/1‑76 (MQ=255)
cGTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCAc < 2:4109857/76‑1 (MQ=255)
gTCCAGCTCCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg < 2:673079/76‑1 (MQ=255)
gTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg > 2:2665106/1‑76 (MQ=255)
gTCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACg < 2:1687624/76‑1 (MQ=255)
tCCAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACgg < 1:1359590/76‑1 (MQ=255)
cAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTa < 1:3085737/76‑1 (MQ=255)
cAGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTa < 1:4846451/76‑1 (MQ=255)
aGCACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTAt < 1:500127/76‑1 (MQ=255)
gCACGTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATg < 1:3334937/76‑1 (MQ=255)
cACCTTATCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGa < 2:3173989/76‑1 (MQ=255)
accttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAc > 1:2534899/1‑76 (MQ=255)
ccttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAcc > 1:1208190/1‑76 (MQ=255)
ccttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGAcc > 2:2987090/1‑76 (MQ=255)
cttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCa < 1:3384715/76‑1 (MQ=255)
ttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCGTTCACTTGTTCCACGGTATGACCaa < 2:2753898/76‑1 (MQ=255)
ttatcttTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCaa < 2:499611/76‑1 (MQ=255)
|
TCGAAGGCATGCTTATCGCCGTCGCTGTATTTACCGCTTTCCAGCTCTTTCAATACTGCGTCCAGCACCTTACCTTTCTTCCGCCATTTCACCGGGTCGTAGCCTTTGGCCAGAATTGCCTTCACTTGTTCCACGGTATGACCAA > NC_000913/3547933‑3548077
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A