Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I1 R1
|
226 |
132.7 |
9745491 |
85.7% |
8351885 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,870,765 |
+G |
coding (476/1764 nt) |
dgoA ← |
2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,870,764 | 1 | . | G | 100.0%
| 272.1
/ NA
| 103 | A159A (GCA→GCC) | dgoA | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (60/43); total (60/43) |
Only 100 of 107 total aligned reads displayed.
TTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCT‑GCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTG > NC_000913/3870689‑3870834
|
ttGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCt < 1:1087588/76‑1 (MQ=255)
tGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCT‑g < 2:4244404/76‑1 (MQ=255)
cccGGCGCGATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCT‑ggc < 1:17817/76‑3 (MQ=255)
gcgcGATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCa < 1:2694412/76‑1 (MQ=255)
cgcgATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAc > 2:1733952/1‑76 (MQ=255)
cgcgATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAc < 2:3605554/76‑1 (MQ=255)
gATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAcgcc < 1:3654361/76‑1 (MQ=255)
gATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAcgcc > 1:3549398/1‑76 (MQ=255)
gATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAcgcc < 1:3119536/76‑1 (MQ=255)
gATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAcgcc < 2:3585543/76‑1 (MQ=255)
gATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTCTTCTGGCGTCAcccc > 2:3517336/1‑76 (MQ=255)
aTAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAcgccg > 2:4562447/1‑76 (MQ=255)
aTAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCAcgccg > 2:3390066/1‑76 (MQ=255)
agagATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACgccgcc > 2:3311839/1‑76 (MQ=255)
agagATCGCGGCCTAAGCCCGCCCCGGCACACCCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACgccgcc < 2:2507695/76‑1 (MQ=255)
gagaTCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCa < 2:4274432/76‑1 (MQ=255)
gagaTCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCa < 2:2350441/76‑1 (MQ=255)
agaTCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCaa > 1:2630129/1‑76 (MQ=255)
agaTCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCaa > 1:1323761/1‑76 (MQ=255)
cGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGc < 2:3067901/76‑1 (MQ=255)
gCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCa > 2:2445434/1‑76 (MQ=255)
gCTGCCTAAGCCCGCCACTGCACAACCTGCGTATATCCACTACGCCAGGTTTTCTGGCGGCAAGCCGCCCACGGCa > 1:73770/1‑76 (MQ=255)
cTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCcgccaacgccaa > 2:2304787/1‑76 (MQ=255)
ccTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGa > 1:2454654/1‑76 (MQ=255)
ccTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGCTTTCTGGCGTCACGCCGCCACCGGCACAgc > 2:4299516/1‑75 (MQ=255)
cTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGAc > 1:1021616/1‑76 (MQ=255)
tAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACt < 1:2534488/76‑1 (MQ=255)
tAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACt > 1:4078039/1‑76 (MQ=255)
tAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACt < 1:2827817/76‑1 (MQ=255)
aaGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCACCGGCAAAGACtc > 2:169619/1‑75 (MQ=255)
accccgcccCTGCACACCCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGc < 1:4589583/74‑1 (MQ=255)
aGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGc < 2:4552425/76‑1 (MQ=255)
aGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGc > 2:4062724/1‑76 (MQ=255)
aGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGc > 1:3363561/1‑76 (MQ=255)
aGCCCCCCCTCGCATAACCAGCGGCTATCCACTGCGCCATGTTTTCTGGTGTTCCGCCGCCCACGGCAAAGAGTGc < 2:2634172/76‑1 (MQ=255)
ccgcccCTGCACAACATGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGAt < 2:588415/76‑1 (MQ=255)
cgcccCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATg > 2:879812/1‑76 (MQ=255)
gcccCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCACCGGCAAAGACTGCGCTgc > 2:4567863/1‑75 (MQ=255)
gcccCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCACAGACTGCGATGt > 2:694234/1‑76 (MQ=255)
gcccCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGt > 1:788378/1‑76 (MQ=255)
gcccCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGt > 1:2063743/1‑76 (MQ=255)
ccccTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTc < 1:657650/76‑1 (MQ=255)
cacTGCACAACCTGCGACTGTCCACTGCGCCAGGTTTTCTGGCGCCACGCCGCCAACGGCAGAGCCTGCGATGGcc > 2:1901899/3‑76 (MQ=255)
ccTGCACACCCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCg < 1:623823/76‑1 (MQ=255)
cTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGa < 2:3966843/76‑1 (MQ=255)
cTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGa > 2:4027008/1‑76 (MQ=255)
cTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGa > 2:3402888/1‑76 (MQ=255)
gCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATg < 1:429423/76‑1 (MQ=255)
cacaACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATgg > 1:3973112/1‑76 (MQ=255)
ccaACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGc < 1:3609437/75‑1 (MQ=255)
acaACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGc > 2:4398297/1‑76 (MQ=255)
cacccTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCa < 1:3770555/73‑1 (MQ=255)
caACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCa < 1:3135566/76‑1 (MQ=255)
caACCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCa > 1:2699350/1‑76 (MQ=255)
aaCCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCaa > 1:2040243/1‑76 (MQ=255)
cgcTGCTTCTATCTGCGGCGCCAGGTTTTGTGGCGTCACGCCGTCACCGCCTAAGACTGCGATGTCCGATGGGAAt < 1:3367589/74‑1 (MQ=255)
aCCTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAAt > 2:4536509/1‑76 (MQ=255)
ccTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATa > 1:3243884/1‑76 (MQ=255)
ccTGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATa < 2:2533266/76‑1 (MQ=255)
cTGCGGCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACCGCCATGTCCGACGGCaaccc > 2:433577/1‑73 (MQ=255)
tGCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATAcc > 1:1302312/1‑76 (MQ=255)
cgCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATAcc < 1:3260104/75‑1 (MQ=255)
gCGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCg > 1:2766921/1‑76 (MQ=255)
cGTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGc > 1:2268728/1‑76 (MQ=255)
gTCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCt > 2:1801789/1‑76 (MQ=255)
tCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCtt > 1:3625307/1‑76 (MQ=255)
tCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCtt < 1:4348990/76‑1 (MQ=255)
tCTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCtt < 1:2722793/76‑1 (MQ=255)
cTATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCttt < 2:1003623/76‑1 (MQ=255)
tATCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGCAGGCAAGACCGCattt > 2:3274419/1‑76 (MQ=255)
aTCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTa > 1:1906733/1‑76 (MQ=255)
tCCACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTaa > 2:2212454/1‑76 (MQ=255)
ccACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGCCTGCCATGCCGGATGCAAATCCCGCTTTCAAc > 2:299911/1‑76 (MQ=255)
cACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACg < 1:2948145/76‑1 (MQ=255)
cACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACg > 1:2605185/1‑76 (MQ=255)
cACTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACg < 2:1749811/76‑1 (MQ=255)
ccTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGc < 2:536492/75‑1 (MQ=255)
ccTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGc < 1:1523043/75‑1 (MQ=255)
cTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCt > 2:3337878/1‑76 (MQ=255)
cTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCt < 1:989491/76‑1 (MQ=255)
cTGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAAGACCGCTTTTAACGCt > 2:2420585/1‑76 (MQ=255)
tGCGCCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCtt < 1:3948138/76‑1 (MQ=255)
gcgcCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCttt > 1:1235827/1‑76 (MQ=255)
cgcCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTg > 2:1474278/1‑76 (MQ=255)
cgcCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTg > 2:3838741/1‑76 (MQ=255)
gcCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTgt > 1:1055405/1‑75 (MQ=255)
gcCAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGa > 1:2188414/1‑76 (MQ=255)
ccAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGAt < 1:2734614/76‑1 (MQ=255)
ccAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGAt < 2:1880072/76‑1 (MQ=255)
ccAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGAt < 1:1997576/76‑1 (MQ=255)
cAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATg > 1:2025975/1‑76 (MQ=255)
cAGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATg < 2:4118798/76‑1 (MQ=255)
cAGGTTGTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATg < 2:3546500/76‑1 (MQ=255)
aGGTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGt > 1:3270326/1‑76 (MQ=255)
ggTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTa > 1:2714117/1‑76 (MQ=255)
ggTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTa > 1:2470243/1‑76 (MQ=255)
ggTTTTCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTa > 2:3802423/1‑76 (MQ=255)
ttttCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTAtt > 1:2890583/1‑76 (MQ=255)
tttCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTg > 2:3135232/1‑76 (MQ=255)
tttCTGGCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTg < 2:2488481/76‑1 (MQ=255)
|
TTGCCCGGCGCGATAGAGATCGCTGCCTAAGCCCGCCCCTGCACAACCTGCGTCTATCCACTGCGCCAGGTTTTCT‑GCGTCACGCCGCCAACGGCAAAGACTGCGATGTCCGATGGCAATACCGCTTTTAACGCTTTGATGTATTG > NC_000913/3870689‑3870834
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A