Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A2 F999 I1 R1	226	132.7	9745491	85.7%	8351885	75.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,979,535	+G	coding (1036/1386 nt)	yifK →	putative amino acid/amine transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,979,534	1	.	G	98.4%	339.2 / ‑1.0	128	coding (1035/1386 nt)	yifK	putative amino acid/amine transport protein
Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (62/64); total (64/64)
Fisher's exact test for biased strand distribution p-value = 4.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 137 total aligned reads displayed.

GCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT  >  NC_000913/3979460‑3979602

gcggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑g                                                                     <  2:1856994/76‑1 (MQ=255)

gaggcAATCGAGAAAGGGTCCAGTCACGGCGTGACGGTGGAGGGTGTCGCAGTAGAGATTGCTATTCTGCTGA‑tta                                                                      <  2:1886808/74‑2 (MQ=255)

 cggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑gg                                                                    >  1:1928039/1‑75 (MQ=255)

 cggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑gg                                                                    <  2:3117500/76‑2 (MQ=255)

  ggcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑ggc                                                                   <  2:2340059/76‑3 (MQ=255)

   gcAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑ggct                                                                  <  2:56389/76‑4 (MQ=255)

      aTGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCAt                                                                <  1:4748352/76‑1 (MQ=255)

       tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATg                                                               <  2:3812561/76‑1 (MQ=255)

       tGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATg                                                               >  1:4859675/1‑76 (MQ=255)

        ggCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGCTGTGGCAGTATCTATTGCTATTCTGCTAATTT‑GCTCACGc                                                              >  2:1497510/1‑76 (MQ=255)

             aaGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCTgaa                                                         <  2:4271468/76‑3 (MQ=255)

                tttCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTa                                                     <  1:3664168/76‑1 (MQ=255)

                  tCCCGTCACGGCGTACCGGTTGCGGGGGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAca                                                   <  2:4496268/76‑1 (MQ=255)

                    ccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GACCTAcatc                                                 >  2:148566/1‑76 (MQ=255)

                    ccGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcatc                                                 <  1:244422/76‑1 (MQ=255)

                    ccGTCACGGCGTACCGGTTGCGGGCGTGGCAGCATCTATGGCTATTCTTCTCA‑TTGGCTCATGCCT‑GAACTTcatc                                                 >  2:2165470/1‑76 (MQ=255)

                     cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTTCTAA‑TTGGCTCATGCCT‑GAACCAcatca                                                >  1:2605568/1‑76 (MQ=255)

                     cGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcatca                                                <  1:422728/76‑1 (MQ=255)

                      gTCGCGGCGTACCGGATGCGGGTGTGGCAGTATCTATTGCTCTTCTGCTAA‑TTGGCTCATGCCT‑GAACTAcatcat                                               <  1:4848711/76‑1 (MQ=255)

                        cACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTc                                             >  1:1736373/1‑76 (MQ=255)

                         aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCAtttc                                            >  1:847008/1‑74 (MQ=255)

                         aCGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTcc                                            <  1:784568/76‑1 (MQ=255)

                          cGGCGTGCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTccc                                           <  2:203952/76‑1 (MQ=255)

                          cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTccc                                           <  1:1672321/76‑1 (MQ=255)

                          cGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTccc                                           >  2:3464608/1‑76 (MQ=255)

                           ggggTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCa                                          <  2:4570222/73‑1 (MQ=255)

                           ggCGTGCCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCa                                          <  2:1531361/76‑1 (MQ=255)

                           ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCa                                          >  1:3109249/1‑76 (MQ=255)

                           ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCa                                          >  1:3549889/1‑76 (MQ=255)

                           ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCa                                          >  1:2672523/1‑76 (MQ=255)

                           ggCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCa                                          >  2:637114/1‑76 (MQ=255)

                            gCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCaa                                         <  1:565691/76‑1 (MQ=255)

                             tgTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCaac                                        >  2:374388/2‑75 (MQ=255)

                             cGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAAt                                        >  1:3723829/1‑76 (MQ=255)

                              gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCCATc                                       >  2:2367813/1‑76 (MQ=255)

                              gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                       >  1:1179430/1‑76 (MQ=255)

                              gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATc                                       <  2:1761527/76‑1 (MQ=255)

                              gTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCC‑CGAACTACATCATTCCCAATc                                       >  2:2614326/1‑76 (MQ=255)

                               tgccGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATcc                                      <  2:1273983/74‑1 (MQ=255)

                               tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATcc                                      <  2:809298/76‑1 (MQ=255)

                               tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATcc                                      >  1:4860689/1‑76 (MQ=255)

                               tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATcc                                      <  1:4337559/76‑1 (MQ=255)

                               tACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATcc                                      <  1:4283187/76‑1 (MQ=255)

                                 ccGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGc                                    >  1:3144895/1‑76 (MQ=255)

                                  cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCCTGCCT‑GAACTACATCATTCCCACTCCGcc                                   >  2:1530662/1‑75 (MQ=255)

                                  cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GACATACATCATTCCCCATCTGCa                                   >  1:2609499/1‑76 (MQ=255)

                                  cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATccccc                                   >  2:3214992/1‑73 (MQ=255)

                                  cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                   <  2:4470675/76‑1 (MQ=255)

                                  cGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                   <  1:3328470/76‑1 (MQ=255)

                                  cGGTTGCGCGTGTGCCAGTATCTATTGCTATTCTTCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCa                                   <  1:3343407/76‑1 (MQ=255)

                                   ggTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCCTTCCCCATCCGCAg                                  >  2:3115430/1‑76 (MQ=255)

                                     ttGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCcgcg                                >  2:4329093/1‑76 (MQ=255)

                                      tGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgt                               >  2:2825553/1‑76 (MQ=255)

                                        cGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgt                             <  2:4371251/76‑1 (MQ=255)

                                        cGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCACCgtgt                             >  2:4391472/1‑76 (MQ=255)

                                        cGGGTGTCGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATTCCT‑GAACTACATCATGCCCAATCCGCAGCgtgt                             <  1:3468633/76‑1 (MQ=255)

                                         gggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtg                            >  2:2774526/1‑76 (MQ=255)

                                         gggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtg                            >  1:1937187/1‑76 (MQ=255)

                                         gggTGTGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCgtgtg                            <  2:4522105/76‑1 (MQ=255)

                                           gtgtGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                          >  1:3353027/1‑76 (MQ=255)

                                           gtgtGGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGtt                          <  2:3729110/76‑1 (MQ=255)

                                            tgtgGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAg                                  >  1:3129668/1‑67 (MQ=255)

                                            tgtgGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGttt                         >  2:1080039/1‑76 (MQ=255)

                                             gtgGCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTg                        >  1:2274171/1‑76 (MQ=255)

                                               ggCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                      >  1:2048408/1‑76 (MQ=255)

                                               ggCAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtc                      >  1:2810191/1‑76 (MQ=255)

                                                 cAGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                    <  1:2590892/76‑1 (MQ=255)

                                                 cAGTAACTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtcta                    >  1:3586323/1‑76 (MQ=255)

                                                  aGTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctac                   <  2:3977932/76‑1 (MQ=255)

                                                   gTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacg                  >  2:2024954/1‑76 (MQ=255)

                                                   gTATCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacg                  <  1:2793398/76‑1 (MQ=255)

                                                     aTCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                >  1:4243793/1‑76 (MQ=255)

                                                     aTCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtc                >  1:4497154/1‑76 (MQ=255)

                                                      tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct               >  2:4400499/1‑76 (MQ=255)

                                                      tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct               >  2:4482314/1‑76 (MQ=255)

                                                      tCTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct               >  1:1765714/1‑76 (MQ=255)

                                                      tCTATTGCTATTCTGCTAA‑TTGGCGCATGCCT‑GACCTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtct               <  2:3784235/76‑1 (MQ=255)

                                                       cTATTGCTCTTGTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATGCCCAATCCGCAGCGTGTGTTTgtctacgtcta              <  2:4045369/76‑1 (MQ=255)

                                                       cTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtcta              <  2:1992241/76‑1 (MQ=255)

                                                       cTATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCACCGTGTGTTTctctacctcta              >  2:1442204/1‑76 (MQ=255)

                                                        tATTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTgtctacgtctac             <  1:4332655/76‑1 (MQ=255)

                                                         aTTGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACa            <  2:4064196/76‑1 (MQ=255)

                                                          ttGCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAg           >  2:2837102/1‑76 (MQ=255)

                                                            gCTATTCTGCTAC‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg         >  2:1333882/1‑76 (MQ=255)

                                                            gCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg         >  1:2573154/1‑76 (MQ=255)

                                                            gCTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTg         >  1:1375436/1‑76 (MQ=255)

                                                             cTATTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGc        >  2:605212/1‑76 (MQ=255)

                                                              tATTCTGGTAA‑TTGGCGCATGCCT‑GAATTACAGCGTTCCCAATGCGCAGCGTGTGTTTGTCTACGTCTCCAGTGcc       <  2:715068/76‑1 (MQ=255)

                                                              tATTCTGCTAA‑TTGGCGCATGCCT‑GAACTACATCACTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGcc       <  1:1230088/76‑1 (MQ=255)

                                                               aTTCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCa      <  2:3764672/76‑1 (MQ=255)

                                                                ttCTGCTAAGTG‑GCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAg     >  2:1343286/1‑76 (MQ=255)

                                                                ttCTGCTAA‑TTGGCTCATGCCT‑GACCTACATCATCCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAg     <  1:4568945/76‑1 (MQ=255)

                                                                 tCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGc    <  2:4229225/76‑1 (MQ=255)

                                                                 tCTGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGc    <  1:639053/76‑1 (MQ=255)

                                                                   tGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt  >  2:3457360/1‑76 (MQ=255)

                                                                   tGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt  >  2:2137396/1‑76 (MQ=255)

                                                                   tGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt  <  1:930914/76‑1 (MQ=255)

                                                                   tGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt  <  1:893355/76‑1 (MQ=255)

                                                                   tGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt  <  1:69807/76‑1 (MQ=255)

                                                                   tGCTAA‑TTGGCTCATGCCT‑GAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGt  <  1:1900712/76‑1 (MQ=255)

GCGGCAATGGCGAAAGTTTCCCGTCACGGCGTACCGGTTGCGGGTGTGGCAGTATCTATTGCTATTCTGCTAA‑TT‑GCTCATGCCTGGAACTACATCATTCCCAATCCGCAGCGTGTGTTTGTCTACGTCTACAGTGCCAGCGT  >  NC_000913/3979460‑3979602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A