Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
715 |
38.4 |
1606192 |
96.6% |
1551581 |
120.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,169,693 |
C→T |
pseudogene (475/475 nt) |
gatR ← |
pseudogene, repressor for gat operon, interrupted by IS3, split galactitol utilization operon repressor, fragment 2, split galactitol utilization operon repressor, interrupted |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,169,693 | 0 | C | T | 100.0%
| 119.4
/ NA
| 37 | pseudogene (475/475 nt) | gatR | pseudogene, repressor for gat operon, interrupted by IS3, split galactitol utilization operon repressor, fragment 2, split galactitol utilization operon repressor, interrupted |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (19/18); total (19/18) |
CCGGCAGCGTTGCGTTGTCGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACCGCGACGGTTAAATTTCGAT > NC_000913/2169561‑2169828
|
ccGGCAGCGTTGCGTTGTCGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACAcc < 2:20674/139‑1 (MQ=255)
cGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCcgc < 1:155195/139‑1 (MQ=255)
tACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGtct > 2:251090/1‑139 (MQ=255)
gTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCa > 2:564027/1‑139 (MQ=255)
tCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑g > 2:776164/1‑139 (MQ=255)
tCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑g > 2:50768/1‑139 (MQ=255)
tCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑g > 2:141018/1‑139 (MQ=255)
ttGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc < 2:329989/139‑1 (MQ=255)
ttGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc < 1:633809/139‑1 (MQ=255)
cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCAGGTTTATCCAc > 1:161021/1‑139 (MQ=255)
cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc > 2:223894/1‑136 (MQ=255)
cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATcc < 1:223894/136‑1 (MQ=255)
cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCAcc > 2:239116/1‑139 (MQ=255)
cGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTATACCCGCGTCTTCTGCAATGCCA‑GTTTATCCAcc < 2:7733/139‑1 (MQ=255)
tctctcTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca < 1:251090/139‑1 (MQ=255)
tctctcTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca > 1:150052/1‑139 (MQ=255)
tctctTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCatcatc > 2:366539/1‑139 (MQ=255)
tctTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCgg < 1:198696/139‑1 (MQ=255)
ctTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGt < 2:270189/139‑1 (MQ=255)
tGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGtaa > 2:638648/1‑139 (MQ=255)
aaCCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGtaata > 2:36511/1‑139 (MQ=255)
gggAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca < 2:72481/125‑1 (MQ=255)
gggAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca > 1:72481/1‑125 (MQ=255)
tGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCATCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa < 1:564027/139‑1 (MQ=255)
gCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGAt < 1:36511/139‑1 (MQ=255)
ggATGCGGTGTAAACACCTTATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTgg < 2:410628/139‑1 (MQ=255)
ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca < 1:77688/89‑1 (MQ=255)
ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGcatca > 2:77688/1‑89 (MQ=255)
ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa > 2:27787/1‑117 (MQ=255)
ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa < 1:27787/117‑1 (MQ=255)
ttATCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAAcc > 2:244394/1‑139 (MQ=255)
aTCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACcgc > 2:144110/1‑139 (MQ=255)
tCCGGCATACAGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACcgcg < 1:239116/139‑1 (MQ=255)
aGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa > 2:342410/1‑104 (MQ=255)
aGAACAATATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGa < 1:342410/104‑1 (MQ=255)
aaTATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCgg > 2:727356/1‑75 (MQ=255)
aaTATTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCgg < 1:727356/75‑1 (MQ=255)
atatTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACCGCGACGGTTAAATTTCGAt < 1:366539/139‑1 (MQ=255)
|
CCGGCAGCGTTGCGTTGTCGATTACCACCAGATTGTCCACTGTTGCGTTAATCAAACTATTCTCTCTTGAACCAGGGAGAATCCGTAATGCCGGATGCGGTGTAAACACCTTATCCGGCATACAGAACAATACTACACCGTAATTAATTTTACCCGCGTCTTCTGCAATGCCA‑GTTTATCCACCTCTGACACAGCATCATCGGTAATAATAATGTCAATTTTTTCGATTGGTAGTACCTGATTAAAACCGCGACGGTTAAATTTCGAT > NC_000913/2169561‑2169828
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
