Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
384,059 |
C→T |
*186* (TAG→TAA) |
yaiS ← |
putative PIG‑L family deacetylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 384,059 | 0 | C | T | 97.3%
| 214.2
/ ‑2.0
| 73 | *186* (TAG→TAA) | yaiS | putative PIG‑L family deacetylase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (43/28); total (44/29) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.70e-01 |
CCAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCGGCA > NC_000913/383924‑384193
|
ccAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAg > 2:1359045/1‑139 (MQ=255)
aGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACACAAATCGCTATTAACCTGTTGTCTGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGAATATAATCGCGTCTTTCTTAGCt > 1:402752/1‑139 (MQ=255)
gTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCttt > 1:995226/1‑139 (MQ=255)
ttCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTAt > 2:866812/1‑139 (MQ=255)
cATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGt > 1:989171/1‑139 (MQ=255)
aGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑aa > 2:40515/1‑139 (MQ=255)
aTTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGa < 1:1359045/139‑1 (MQ=255)
aTTTTATGAATTACAAAGCCCTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGa < 2:1303506/139‑1 (MQ=255)
tttATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACt < 1:866812/139‑1 (MQ=255)
aTGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACtgtg < 2:989171/139‑1 (MQ=255)
aTGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACtgtg < 2:415038/139‑1 (MQ=255)
aTGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTCAATGCAGC‑AAGTTTGACtgtg < 2:198450/139‑1 (MQ=255)
tGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGa > 1:1048649/1‑139 (MQ=255)
aCAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATAtt > 2:371356/1‑139 (MQ=255)
aCAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGGTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATAtt > 1:1130056/1‑139 (MQ=255)
aGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACt < 1:229577/125‑1 (MQ=255)
aGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACt > 2:229577/1‑125 (MQ=255)
aGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATAttcttc > 2:851930/1‑139 (MQ=255)
ccTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTcttctt > 2:82716/1‑139 (MQ=255)
tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑aa > 1:365241/1‑139 (MQ=255)
tCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑aa > 2:72383/1‑139 (MQ=255)
cccAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACgg < 1:40515/139‑1 (MQ=255)
cccAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACgg < 1:371356/139‑1 (MQ=255)
gATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTc > 2:1207565/1‑139 (MQ=255)
aTCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCa > 1:935714/1‑139 (MQ=255)
cGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCaaa < 2:213880/139‑1 (MQ=255)
tATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATgcagc < 1:66709/97‑1 (MQ=255)
tATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATgcagc > 2:66709/1‑97 (MQ=255)
aTTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAAcc > 2:1102803/1‑139 (MQ=255)
ttGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCt < 1:82716/139‑1 (MQ=255)
ttGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCt < 1:1102803/139‑1 (MQ=255)
tGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTg > 1:163096/1‑139 (MQ=255)
gttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCAt > 1:203230/1‑139 (MQ=255)
gttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCACC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAATACCTGAGGTAt < 1:851930/139‑1 (MQ=255)
gttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCAt < 2:1048649/139‑1 (MQ=255)
ttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTg < 1:1429524/132‑1 (MQ=255)
ttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTg > 2:1429524/1‑132 (MQ=255)
ttgtCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTT‑ATTCAGCAAATTTTGATGGTG‑AATTTTCTTCTTTAAACGAATTAAAAAACTTAAGGctaa > 2:1258181/1‑136 (MQ=255)
ccGCGAAATTGTGCTACTGCACGCAGGCGATCATTACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATg < 2:402752/139‑1 (MQ=255)
cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATg > 2:1341939/1‑78 (MQ=255)
cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATg < 1:1341939/78‑1 (MQ=255)
cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGa > 2:1302415/1‑139 (MQ=255)
cgcgAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGa < 1:1207565/139‑1 (MQ=255)
aTTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCa < 2:995226/139‑1 (MQ=255)
cACGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTCTGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGt > 1:948577/1‑139 (MQ=255)
cGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGcc > 1:774299/1‑124 (MQ=255)
cGCAGGCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGcc < 2:774299/124‑1 (MQ=255)
aGGCGATCATGAGGCATATCATCGCGTCGCACTTAGCTTTTATATTTTTTTAATTCAGC‑AAGTTTGACTGTGAAATATTCTTCTCT‑TACGGATTCAAAAACCTGAGGCATAAATGAAAGTCACGTatatggagcttcat > 1:621656/1‑126 (MQ=255)
gCGATCATGACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAg > 2:1454689/1‑139 (MQ=255)
gACGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACATGAGGCATAAATGAAAGCCAGGTACTTGGGGTTACGTAGCCGAGAAt > 2:1349008/1‑139 (MQ=255)
cGCATATAATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAAttt > 2:1129382/1‑139 (MQ=255)
tataATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGT‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCgg > 2:962288/1‑139 (MQ=255)
tataATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGa < 1:1086940/100‑1 (MQ=255)
tataATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGa > 2:1086940/1‑100 (MQ=255)
tataATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCgg > 2:91023/1‑139 (MQ=255)
tataATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCgg > 2:867155/1‑139 (MQ=255)
ataATCGCGACGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGa > 1:1463768/1‑139 (MQ=255)
taATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGaa > 2:1433249/1‑56 (MQ=255)
taATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGaa < 1:1433249/56‑1 (MQ=255)
taATCGCGTCGTTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTTGGGTTTCGTAGCCGAGAATTTGCGGaa < 1:1129382/139‑1 (MQ=255)
cgtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAAtt > 2:1456709/1‑126 (MQ=255)
cgtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAAtt < 1:1456709/126‑1 (MQ=255)
cgtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTc > 1:839026/1‑139 (MQ=255)
gtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCgaga > 2:784989/1‑122 (MQ=255)
gtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCgaga < 1:784989/122‑1 (MQ=255)
gtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCg > 2:974808/1‑139 (MQ=255)
gtcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCg > 2:378152/1‑139 (MQ=255)
tcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACtgtg > 1:515710/1‑46 (MQ=255)
tcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACtgtg < 2:515710/46‑1 (MQ=255)
tcgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCgg < 2:365241/139‑1 (MQ=255)
cgtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCggc > 1:740838/1‑139 (MQ=255)
gtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCggca < 2:740838/139‑1 (MQ=255)
gtTCTTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCggca > 2:664542/1‑139 (MQ=255)
|
CCAGGTTTTCATGCAATTTGCTCAAAGAATCATTTTATGAATTACAAAGCCTTCACCCAGATCGCTATTGACCTGTTGTCCGCGAAATTGTGCAACTGCACGCAGGCGATCATGACGCATATAATCGCGTCGTTCCTAGCTTTTATGTTTTTTTAATGCAGC‑AAGTTTGACTGTGAAATATTCTTCTTT‑AACGGATTCAAAAACCTGAGGCATAAATGAAAGCCAGGTACTTGGGGTTTCGTAGCCGAGAATTTGCGGAATAGTTCGGCA > NC_000913/383924‑384193
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
