Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I2 R1 777 59.2 2955938 92.5% 2734242 106.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 484,106 C→T A100T (GCG→ACG)  acrB ← multidrug efflux system protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913484,1060CT100.0% 237.1 / NA 73A100T (GCG→ACG) acrBmultidrug efflux system protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (29/44);  total (29/44)

TTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTCCTGCA  >  NC_000913/483973‑484234
                                                                                                                                     |                                                                                                                                
ttGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAg                                                                                                                             >  2:1295947/1‑139 (MQ=255)
      aCGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAg                                                                                                                       <  2:533275/139‑1 (MQ=255)
       cGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCa                                                                                                                        >  2:499217/1‑137 (MQ=255)
       cGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCa                                                                                                                        <  1:499217/137‑1 (MQ=255)
        gCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGAc                                                                                                                     >  2:808391/1‑139 (MQ=255)
        gCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGAc                                                                                                                     >  1:656906/1‑139 (MQ=255)
        gCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGAc                                                                                                                     >  2:110999/1‑139 (MQ=255)
           gACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCa                                                                                                                  <  1:1429818/139‑1 (MQ=255)
           gACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACAGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCa                                                                                                                  <  1:393588/139‑1 (MQ=255)
                  aTCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCa                                                                                                           <  1:676139/139‑1 (MQ=255)
                  aTCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCAATATCCGTATCAGTACCAGACTCAAAGGTCa                                                                                                           <  1:1247465/139‑1 (MQ=255)
                    cAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCAGCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAgg                                                                                                         <  2:357623/139‑1 (MQ=255)
                       gAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCa                                                                                                                              <  2:1140417/115‑1 (MQ=255)
                       gAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCa                                                                                                                              >  1:1140417/1‑115 (MQ=255)
                           ctgctgGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCt                                                                                                  >  2:376002/1‑139 (MQ=255)
                             gctgGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGc                                                                                                <  1:710338/139‑1 (MQ=255)
                              ctgGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCa                                                                                               >  2:1235270/1‑139 (MQ=255)
                              ctgGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCa                                                                                               <  1:1083911/139‑1 (MQ=255)
                                 gatgatTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACgg                                                                                            >  1:1083471/1‑139 (MQ=255)
                                  atgatTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGt                                                                                           <  1:44657/139‑1 (MQ=255)
                                     atTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTAt                                                                                                                                <  1:1080189/99‑1 (MQ=255)
                                     atTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTAt                                                                                                                                >  2:1080189/1‑99 (MQ=255)
                                      tttCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCa                                                                                                                  >  1:248032/1‑112 (MQ=255)
                                      tttCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCa                                                                                                                  <  2:248032/112‑1 (MQ=255)
                                       ttCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCg                                                                                      <  2:1083471/139‑1 (MQ=255)
                                            aaCGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAg                                                                                 >  2:769005/1‑139 (MQ=255)
                                             aCGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGt                                                                                <  1:1296830/139‑1 (MQ=255)
                                               gCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCa                                                                              <  1:1295947/139‑1 (MQ=255)
                                                cTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCAc                                                                             >  1:177635/1‑139 (MQ=255)
                                                cTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCAc                                                                             <  2:266872/139‑1 (MQ=255)
                                                cTCACCCCTTGCTGCTGAACGTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAAGCTGCGCGATATACGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCAc                                                                             <  2:1067959/139‑1 (MQ=255)
                                                   aCCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCa                                                                                               >  1:1111693/1‑118 (MQ=255)
                                                   aCCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCa                                                                                               <  2:1111693/118‑1 (MQ=255)
                                                      ccTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTag                                                                       <  1:397844/139‑1 (MQ=255)
                                                        ttGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTagag                                                                     <  2:571115/139‑1 (MQ=255)
                                                        ttGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTagag                                                                     <  2:1100228/139‑1 (MQ=255)
                                                        ttGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTagag                                                                     >  1:13655/1‑139 (MQ=255)
                                                        ttGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTagag                                                                     <  1:376002/139‑1 (MQ=255)
                                                        ttGCTGCTGAACTTCTTGCAGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTagag                                                                     >  1:1194112/1‑139 (MQ=255)
                                                         tgctgcTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAgg                                                                    <  2:1142780/139‑1 (MQ=255)
                                                         tgctgcTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAgg                                                                    <  2:13655/139‑1 (MQ=255)
                                                          gctgctGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGa                                                                   >  2:710912/1‑139 (MQ=255)
                                                           ctgctgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGAc                                                                  <  1:1171711/139‑1 (MQ=255)
                                                            tgctgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACa                                                                 <  1:917664/139‑1 (MQ=255)
                                                            tgctgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACa                                                                 <  2:1168031/139‑1 (MQ=255)
                                                              ctgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATg                                                               >  1:1298680/1‑139 (MQ=255)
                                                               tgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATg                                                               >  1:698219/1‑138 (MQ=255)
                                                               tgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATg                                                               <  2:698219/138‑1 (MQ=255)
                                                               tgAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGt                                                              >  1:333615/1‑139 (MQ=255)
                                                                gAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTa                                                             <  2:1298680/139‑1 (MQ=255)
                                                                  aCTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACa                                                           <  1:1235270/139‑1 (MQ=255)
                                                                  aCTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACa                                                           <  2:5137/139‑1 (MQ=255)
                                                                  aCTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACa                                                           <  2:177635/139‑1 (MQ=255)
                                                                   cttcttGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCa                                                                                                                  <  2:1287626/83‑1 (MQ=255)
                                                                   cttcttGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCa                                                                                                                  >  1:1287626/1‑83 (MQ=255)
                                                                           ggCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTAt                                                  >  2:32500/1‑139 (MQ=255)
                                                                             cagcaACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTAc                                                                                                                          >  1:1418992/1‑65 (MQ=255)
                                                                             cagcaACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTAc                                                                                                                          <  2:1418992/65‑1 (MQ=255)
                                                                              agcaACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGa                                               <  1:769005/139‑1 (MQ=255)
                                                                                caACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAg                                                       <  1:1292233/129‑1 (MQ=255)
                                                                                caACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAg                                                       >  2:696771/1‑129 (MQ=255)
                                                                                caACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAg                                                       <  1:696771/129‑1 (MQ=255)
                                                                                caACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAg                                                       >  2:1292233/1‑129 (MQ=255)
                                                                                 aaCGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATAc                                            <  2:656906/139‑1 (MQ=255)
                                                                                                       tGTTCTGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAAc                      <  2:333615/139‑1 (MQ=255)
                                                                                                            tGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCa                                                                                               >  2:1128200/1‑61 (MQ=255)
                                                                                                            tGCACCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCa                                                                                               <  1:1128200/61‑1 (MQ=255)
                                                                                                               aCCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAgg                                                                                                         >  2:58110/1‑48 (MQ=255)
                                                                                                               aCCTGAACCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAgg                                                                                                         <  1:58110/48‑1 (MQ=255)
                                                                                                                    aaCCTGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCgtg         >  2:363698/1‑139 (MQ=255)
                                                                                                                        tGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGAt                         >  2:537082/1‑119 (MQ=255)
                                                                                                                        tGCGCGATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGAt                         <  1:537082/119‑1 (MQ=255)
                                                                                                                           gcgATATCCGTATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTCCTGCa  <  1:808391/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                
TTGATAACGCCGACAACCATCAGGAAGCTGCTGGATGATTTCTCAACGCTCACCCCTTGCTGCTGAACTTCTTGCGGCAGCAACGGCATCGCCAGCTGCAGTTTGTTCTGCACCTGAACCTGCGCGATATCCGCATCAGTACCAGACTCAAAGGTCAGGGTGATCTGCACGGTACCCGTGGAGTCACTGTTAGAGGACATGTACATCAGGTTATCGATACCGTTCATATTCTGTTCGATAACCTGTGTCACCGTGTCCTGCA  >  NC_000913/483973‑484234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A