Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I2 R1 777 59.2 2955938 92.5% 2734242 106.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,196,735 A→G intergenic (+362/+132) icd → / ← ymfD isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase/e14 prophage, putative SAM‑dependent methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,196,7350AG100.0% 288.2 / NA 80intergenic (+362/+132)icd/ymfDisocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase/e14 prophage, putative SAM‑dependent methyltransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (41/39);  total (41/39)

CCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGTATTA  >  NC_000913/1196612‑1196869
                                                                                                                           |                                                                                                                                      
ccccAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACACGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGGCAGGGGGCAGCCAACAGGCAtt                                                                                                                         >  1:184446/1‑139 (MQ=255)
  ccAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTgg                                                                                                                       <  2:823692/139‑1 (MQ=255)
          agttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATc                                                                                                               >  1:151028/1‑139 (MQ=255)
           gttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCaa                                                                                                                 >  2:1237914/1‑136 (MQ=255)
           gttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCaa                                                                                                                 <  1:1237914/136‑1 (MQ=255)
                gTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACa                                                                                                                               <  2:517624/117‑1 (MQ=255)
                gTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACa                                                                                                                               >  1:517624/1‑117 (MQ=255)
                gTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                         <  2:516972/139‑1 (MQ=255)
                 tATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg                                                                                                        <  2:184446/139‑1 (MQ=255)
                      aCTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCaa                                                                                                                 <  2:259584/125‑1 (MQ=255)
                      aCTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCaa                                                                                                                 >  1:259584/1‑125 (MQ=255)
                            attaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAgg                                                                                                >  1:1226895/1‑136 (MQ=255)
                            attaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAgg                                                                                                <  2:1226895/136‑1 (MQ=255)
                             ttaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACa                                                                                            >  2:750109/1‑139 (MQ=255)
                             ttaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACa                                                                                            >  2:844288/1‑139 (MQ=255)
                                  aCAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                         <  2:192264/121‑1 (MQ=255)
                                  aCAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                         >  1:192264/1‑121 (MQ=255)
                                  aCAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCgg                                                                                       >  1:1030335/1‑139 (MQ=255)
                                  aCAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCgg                                                                                       >  1:549131/1‑139 (MQ=255)
                                    aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGaa                                                                                     >  2:1329405/1‑139 (MQ=255)
                                            aTTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCa                                                                                                                           >  1:208048/1‑93 (MQ=255)
                                            aTTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCa                                                                                                                           <  2:208048/93‑1 (MQ=255)
                                                ccACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                         <  1:218701/107‑1 (MQ=255)
                                                ccACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa                                                                                                         >  2:218701/1‑107 (MQ=255)
                                                        tACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCaa                                                                                                                                 >  2:783304/1‑75 (MQ=255)
                                                        tACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCaa                                                                                                                                 <  1:783304/75‑1 (MQ=255)
                                                             ccGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGcc                                                            <  1:787209/139‑1 (MQ=255)
                                                               gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCAt                                                                                                                          >  2:114971/1‑75 (MQ=255)
                                                               gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCAt                                                                                                                          <  1:114971/75‑1 (MQ=255)
                                                               gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGcccc                                                          >  2:260916/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGTGGGCAGCCAACAGGCATTGGGTGCAATCACCTTATCGCTCAGGTACATGCGGAATGTAAAAAAGGCAGCGAGCGCGGCCCCt                                                         >  1:952652/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCg                                                                                                      <  1:342828/94‑1 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCg                                                                                                      >  2:342828/1‑94 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTTAGGTACATGCg                                                                                        >  2:1446803/1‑108 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTTAGGTACATGCg                                                                                        <  1:1446803/108‑1 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                        >  1:1101332/1‑108 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                        <  2:1101332/108‑1 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:112726/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:1264865/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:155285/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:764730/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  1:82401/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:734088/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:1045568/1‑139 (MQ=255)
                                                                cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt                                                         >  2:517819/1‑139 (MQ=255)
                                                                 tCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGTGGCCCCtt                                                        <  2:1030335/139‑1 (MQ=255)
                                                                 tCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCtt                                                        <  1:1264865/139‑1 (MQ=255)
                                                                 tCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCtt                                                        <  1:260916/139‑1 (MQ=255)
                                                                     atatTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTcaca                                                    <  1:1045568/139‑1 (MQ=255)
                                                                        ttGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                                 <  1:155285/139‑1 (MQ=255)
                                                                        ttGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                                 <  2:151028/139‑1 (MQ=255)
                                                                           ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATc                                              >  1:274349/1‑139 (MQ=255)
                                                                             aaaTTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCcgcg                                                                     <  1:1127494/114‑1 (MQ=255)
                                                                             aaaTTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCcgcg                                                                     >  2:1127494/1‑114 (MQ=255)
                                                                             aaaTTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCtt                                            <  2:1122393/139‑1 (MQ=255)
                                                                                   ccGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGtt                                                                                                    <  2:813075/77‑1 (MQ=255)
                                                                                   ccGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGtt                                                                                                    >  1:813075/1‑77 (MQ=255)
                                                                                   ccGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTAc                                      >  2:248819/1‑139 (MQ=255)
                                                                                        tttGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                                 <  1:248819/139‑1 (MQ=255)
                                                                                        tttGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga                                 <  2:274349/139‑1 (MQ=255)
                                                                                          tGTATCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACt                               >  2:1275136/1‑139 (MQ=255)
                                                                                             aTCAACTACTCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGtt                            >  1:912079/1‑139 (MQ=255)
                                                                                                    actCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTa                     <  1:844288/139‑1 (MQ=255)
                                                                                                      tCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                        <  1:382513/70‑1 (MQ=255)
                                                                                                      tCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                        >  2:382513/1‑70 (MQ=255)
                                                                                                      tCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                                 <  2:432061/109‑1 (MQ=255)
                                                                                                      tCACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac                                                 >  1:432061/1‑109 (MQ=255)
                                                                                                       cACCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAggg                  <  2:1237058/139‑1 (MQ=255)
                                                                                                        aCCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                        >  2:1268003/1‑68 (MQ=255)
                                                                                                        aCCCGGGACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg                                                                                        <  1:1268003/68‑1 (MQ=255)
                                                                                                             ggACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg                                                              <  1:890304/89‑1 (MQ=255)
                                                                                                             ggACTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg                                                              >  2:890304/1‑89 (MQ=255)
                                                                                                               aCTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAAttatta          <  1:214867/139‑1 (MQ=255)
                                                                                                               aCTCGCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAAttatta          <  1:1275136/139‑1 (MQ=255)
                                                                                                                   gCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCttt                                           >  2:150369/1‑102 (MQ=255)
                                                                                                                   gCCAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCttt                                           <  1:150369/102‑1 (MQ=255)
                                                                                                                    ccAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAAttatta          <  1:645557/134‑1 (MQ=255)
                                                                                                                    ccAGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAAttatta          >  2:645557/1‑134 (MQ=255)
                                                                                                                    ccAGGGGGCAGCCAACAGGCAGTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGta     <  2:1177229/139‑1 (MQ=255)
                                                                                                                       ggggGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGtatta  <  2:82401/139‑1 (MQ=255)
                                                                                                                        ggggCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacata                                                  <  2:1169639/90‑1 (MQ=255)
                                                                                                                        ggggCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacata                                                  >  1:1169639/1‑90 (MQ=255)
                                                                                                                           |                                                                                                                                      
CCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGTATTA  >  NC_000913/1196612‑1196869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A