Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
781 |
46.9 |
2231650 |
93.5% |
2086592 |
109.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,196,735 |
A→G |
intergenic (+362/+132) |
icd → / ← ymfD |
isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase/e14 prophage, putative SAM‑dependent methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,196,735 | 0 | A | G | 100.0%
| 338.4
/ NA
| 93 | intergenic (+362/+132) | icd/ymfD | isocitrate dehydrogenase, e14 prophage attachment site, tellurite reductase/e14 prophage, putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (47/46); total (47/46) |
TTAAGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCG > NC_000913/1196603‑1196864
|
ttAAGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAACTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACAACTCACCCGGGACTCGCCA‑GGGGGCAGCCa > 2:782762/1‑139 (MQ=255)
aaGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAAc > 2:896178/1‑139 (MQ=255)
gACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAg > 1:834899/1‑139 (MQ=255)
ccccAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCAtt > 2:936733/1‑139 (MQ=255)
ccccAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCAtt > 1:865185/1‑139 (MQ=255)
aaaGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGt < 2:126887/139‑1 (MQ=255)
gttagttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCa < 1:896178/139‑1 (MQ=255)
gttaTGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCa > 2:623326/1‑139 (MQ=255)
gTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa < 1:805488/139‑1 (MQ=255)
tATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg > 1:661822/1‑139 (MQ=255)
tCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg > 1:509142/1‑136 (MQ=255)
tCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAg < 2:509142/136‑1 (MQ=255)
ttattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa > 2:514868/1‑129 (MQ=255)
ttattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa < 1:514868/129‑1 (MQ=255)
tattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCa < 2:1033063/135‑1 (MQ=255)
tattaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCa > 1:1033063/1‑135 (MQ=255)
ttaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCaa < 2:238847/102‑1 (MQ=255)
ttaGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCaa > 1:238847/1‑102 (MQ=255)
gACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCg < 1:161840/139‑1 (MQ=255)
cAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGa < 1:915742/139‑1 (MQ=255)
aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAg > 1:722812/1‑91 (MQ=255)
aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAg < 2:722812/91‑1 (MQ=255)
aaTTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGaa > 2:984604/1‑139 (MQ=255)
ttATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATg > 1:118947/1‑139 (MQ=255)
ccTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTa > 1:55095/1‑113 (MQ=255)
ccTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTa < 2:55095/113‑1 (MQ=255)
ccTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGa > 1:554456/1‑139 (MQ=255)
acacCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc < 1:936733/139‑1 (MQ=255)
acCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg < 1:984604/139‑1 (MQ=255)
acCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg < 2:554456/139‑1 (MQ=255)
ccGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAAc > 2:258533/1‑71 (MQ=255)
ccGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAAc < 1:258533/71‑1 (MQ=255)
cGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGccc > 1:377896/1‑139 (MQ=255)
gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAgg > 2:917637/1‑101 (MQ=255)
gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAgg < 1:917637/101‑1 (MQ=255)
gCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc < 2:306801/133‑1 (MQ=255)
gCTCAAATATTGTTAAATCGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc > 1:306801/1‑133 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTggg > 1:369056/1‑78 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTggg < 2:369056/78‑1 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCaa < 1:697774/83‑1 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCaa > 2:697774/1‑83 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAAt < 1:323509/84‑1 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAAt > 2:323509/1‑84 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa > 1:896634/1‑91 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTa < 2:896634/91‑1 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGc < 1:1021034/135‑1 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGc > 2:1021034/1‑135 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt > 2:1038146/1‑139 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt > 1:849934/1‑139 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt > 2:9429/1‑139 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt > 1:130614/1‑139 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCt > 1:292993/1‑139 (MQ=255)
cTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGACAGGGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGcccc > 2:773672/1‑139 (MQ=255)
ttGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac < 1:623326/139‑1 (MQ=255)
ttGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac < 2:834899/139‑1 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGa < 2:675176/99‑1 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc > 1:756591/1‑121 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAgcgc < 2:756591/121‑1 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGcgcg > 2:347768/1‑122 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGcgcg < 1:347768/122‑1 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATc > 1:590815/1‑139 (MQ=255)
ttAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATc > 2:439436/1‑139 (MQ=255)
ttAAATTGCCGGTTCTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAAACACCTTAGCGTTCAGGTACATGCGGa > 1:675176/1‑99 (MQ=255)
ttAAATTGACGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCATCACATACATc > 1:721525/1‑139 (MQ=255)
gCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTa < 2:118947/139‑1 (MQ=255)
gCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTa > 2:476149/1‑139 (MQ=255)
ccGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTAc > 2:648412/1‑139 (MQ=255)
ttttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgag < 2:374436/139‑1 (MQ=255)
ttttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgag < 1:657281/139‑1 (MQ=255)
ttttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgag < 2:377896/139‑1 (MQ=255)
tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAATAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCTGCCCCTTCACATACATCTTTAGTACTgaga < 2:721525/139‑1 (MQ=255)
tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga < 1:648412/139‑1 (MQ=255)
tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga < 2:849934/139‑1 (MQ=255)
tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga < 2:292993/139‑1 (MQ=255)
tttGTATCAACTACTCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga < 2:130614/139‑1 (MQ=255)
actactCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCtt > 2:424840/1‑107 (MQ=255)
actactCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCtt < 1:424840/107‑1 (MQ=255)
tCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac > 1:1014522/1‑109 (MQ=255)
tCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac < 2:1014522/109‑1 (MQ=255)
tCACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAgg > 2:977742/1‑139 (MQ=255)
cACCCGGGACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAggg < 1:782762/139‑1 (MQ=255)
ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTcaca > 1:451650/1‑99 (MQ=255)
ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTcaca < 2:451650/99‑1 (MQ=255)
ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga > 2:697692/1‑118 (MQ=255)
ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga < 1:697692/118‑1 (MQ=255)
ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga < 1:234232/118‑1 (MQ=255)
ggACTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTgaga > 2:234232/1‑118 (MQ=255)
aCTCGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAAttatta < 1:439436/139‑1 (MQ=255)
cGCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCg < 2:661822/139‑1 (MQ=255)
gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg < 1:528627/83‑1 (MQ=255)
gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCgg > 2:528627/1‑83 (MQ=255)
gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac < 2:932880/96‑1 (MQ=255)
gCCA‑GGGGGCAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCacatac > 1:932880/1‑96 (MQ=255)
|
TTAAGACATCCCCAAAGTTAGTTATGTATTCACTGTTATTAGGACAATTATGAATTACCACTCCTTACACCCGCTCAAATATTGTTAAATTGCCGGTTTTGTATCAACTACTCACCCGGGACTCGCCA‑GGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCG > NC_000913/1196603‑1196864
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
