Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I2 R1 777 59.2 2955938 92.5% 2734242 106.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,817,796 (T)6→5 coding (705/1353 nt) chbF ← phospho‑chitobiase, general 6‑phospho‑beta‑glucosidase activity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,817,7910T.100.0% 330.3 / NA 78coding (710/1353 nt)chbFphospho‑chitobiase, general 6‑phospho‑beta‑glucosidase activity
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (38/40);  total (38/40)

TGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAA  >  NC_000913/1817658‑1817921
                                                                                                                                     |                                                                                                                                  
tGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTTAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATAttttta                                                                                                                               >  2:177800/1‑138 (MQ=255)
tGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATAttttta                                                                                                                               >  2:503946/1‑138 (MQ=255)
tGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATAttttta                                                                                                                               >  1:1276056/1‑138 (MQ=255)
    ccgccTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACaga                                                                                                                          >  1:1375720/1‑139 (MQ=255)
      gccTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAgg                                                                                                                        <  1:491227/139‑1 (MQ=255)
       ccTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGa                                                                                                                       <  2:1276056/139‑1 (MQ=255)
         tttGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACg                                                                                                                     >  1:1049829/1‑139 (MQ=255)
            gtagtaTTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGAACGCtt                                                                                                                  >  2:146728/1‑139 (MQ=255)
                   tCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTg                                                                                                           >  2:1212168/1‑139 (MQ=255)
                          tttCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATAttt                                                                                                                                  <  1:327526/110‑1 (MQ=255)
                          tttCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATAttt                                                                                                                                  >  2:327526/1‑110 (MQ=255)
                                     aGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATc                                                                                         >  1:1326027/1‑139 (MQ=255)
                                     aGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATc                                                                                         >  2:692999/1‑139 (MQ=255)
                                     aGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACCAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCt                                                                                                       >  1:1400501/1‑125 (MQ=255)
                                     aGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACCAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCt                                                                                                       <  2:1400501/125‑1 (MQ=255)
                                        aTCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAg                                                                                      <  2:1326027/139‑1 (MQ=255)
                                                 tGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGc                                                                             >  1:1473163/1‑139 (MQ=255)
                                                   cTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCaa                                                                           >  1:461844/1‑139 (MQ=255)
                                                         gTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGcgcg                                                                     <  1:1212168/139‑1 (MQ=255)
                                                            aTACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACt                                                                  <  1:741440/139‑1 (MQ=255)
                                                             tACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACtt                                                                 >  1:1237909/1‑139 (MQ=255)
                                                                 gcagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCa                                                             <  2:1375720/139‑1 (MQ=255)
                                                                  cagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAg                                                                                      <  1:180394/113‑1 (MQ=255)
                                                                  cagATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAg                                                                                      >  2:180394/1‑113 (MQ=255)
                                                                   agATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCAtt                                                           >  2:1430142/1‑139 (MQ=255)
                                                                    gATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACagag                                                                                                                         >  2:1451367/1‑76 (MQ=255)
                                                                    gATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACagag                                                                                                                         <  1:1451367/76‑1 (MQ=255)
                                                                    gATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCAttt                                                          >  2:47763/1‑139 (MQ=255)
                                                                     aTAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAg                                                                                      <  2:1185916/110‑1 (MQ=255)
                                                                     aTAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAg                                                                                      >  1:1185916/1‑110 (MQ=255)
                                                                      tAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAgg                                                                                                                        <  1:411259/75‑1 (MQ=255)
                                                                      tAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAgg                                                                                                                        >  2:411259/1‑75 (MQ=255)
                                                                       aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGa                                                                                                     >  2:876462/1‑93 (MQ=255)
                                                                       aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGa                                                                                                     <  1:876462/93‑1 (MQ=255)
                                                                       aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCca                                                                                                <  2:1149693/98‑1 (MQ=255)
                                                                       aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCca                                                                                                >  1:1149693/1‑98 (MQ=255)
                                                                       aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGc                                                               >  2:575072/1‑131 (MQ=255)
                                                                       aaGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGc                                                               <  1:575072/131‑1 (MQ=255)
                                                                           aCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCTTCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   <  2:895847/139‑1 (MQ=255)
                                                                           aCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   <  1:692999/139‑1 (MQ=255)
                                                                           aCATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   <  2:461844/139‑1 (MQ=255)
                                                                            cATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCa                                                             <  2:152396/128‑1 (MQ=255)
                                                                            cATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCa                                                             <  2:292683/128‑1 (MQ=255)
                                                                            cATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCa                                                             >  1:152396/1‑128 (MQ=255)
                                                                            cATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCa                                                             >  1:292683/1‑128 (MQ=255)
                                                                            cATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGcac                                                  >  2:1441490/1‑139 (MQ=255)
                                                                               ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCTAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGa                                                                                                     <  1:1108707/85‑1 (MQ=255)
                                                                               ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGa                                                                                                     >  2:1108707/1‑85 (MQ=255)
                                                                               ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATc                                               >  2:455613/1‑139 (MQ=255)
                                                                               ggCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGACGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAACGCGCGACTTGCCATTTATCAGCACATc                                               >  1:598166/1‑139 (MQ=255)
                                                                                gcagcaGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATcc                                              <  1:1430142/139‑1 (MQ=255)
                                                                                    cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGccc                                                                                                        >  1:902781/1‑77 (MQ=255)
                                                                                    cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGccc                                                                                                        <  2:902781/77‑1 (MQ=255)
                                                                                    cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   <  2:1378173/130‑1 (MQ=255)
                                                                                    cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   >  1:1378173/1‑130 (MQ=255)
                                                                                    cagATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTaa                                          >  1:473357/1‑139 (MQ=255)
                                                                                       aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCca                                                                                                <  2:1450842/82‑1 (MQ=255)
                                                                                       aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCca                                                                                                >  1:1450842/1‑82 (MQ=255)
                                                                                       aTTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGa                                       >  1:108023/1‑139 (MQ=255)
                                                                                        tttaacgaacgAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      <  1:177800/136‑1 (MQ=255)
                                                                                        ttCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      <  2:1237909/139‑1 (MQ=255)
                                                                                        ttCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      <  2:690825/139‑1 (MQ=255)
                                                                                        ttCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      <  2:598166/139‑1 (MQ=255)
                                                                                        ttCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      <  2:1050455/139‑1 (MQ=255)
                                                                                                 cgaaTTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCca                                                                                                >  1:1477626/1‑72 (MQ=255)
                                                                                                 cgaaTTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCca                                                                                                <  2:1477626/72‑1 (MQ=255)
                                                                                                   aaTTAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATACGGt                           <  2:1049829/139‑1 (MQ=255)
                                                                                                     ttAAGCCCTCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTg                         <  1:470844/139‑1 (MQ=255)
                                                                                                             tCACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGaa                 <  1:455613/139‑1 (MQ=255)
                                                                                                              cACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGa                                                                                                     <  1:681517/54‑1 (MQ=255)
                                                                                                              cACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGa                                                                                                     >  2:681517/1‑54 (MQ=255)
                                                                                                              cACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCt                                             >  2:683384/1‑110 (MQ=255)
                                                                                                              cACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCt                                             <  1:683384/110‑1 (MQ=255)
                                                                                                              cACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      >  2:1123371/1‑117 (MQ=255)
                                                                                                              cACTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGaa                                      <  1:1123371/117‑1 (MQ=255)
                                                                                                               aCTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACa               <  1:1337016/139‑1 (MQ=255)
                                                                                                               aCTAAATGGCAGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACa               <  1:503946/139‑1 (MQ=255)
                                                                                                                         aGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   <  2:457992/93‑1 (MQ=255)
                                                                                                                         aGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGca                                                   >  1:457992/1‑93 (MQ=255)
                                                                                                                         aGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGc                                                    >  2:615413/1‑92 (MQ=255)
                                                                                                                         aGATCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGc                                                    <  1:615413/92‑1 (MQ=255)
                                                                                                                           aTCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCgatagata   >  2:865013/1‑139 (MQ=255)
                                                                                                                           aTCGAAAATA‑TTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGA‑GCCGAACAAATCGATAGATaa  >  1:1209922/1‑139 (MQ=255)
                                                                                                                                     |                                                                                                                                  
TGCGCCGCCTTTGTAGTATTCGCCCATTTCAATAGCCAGCATCTCTTTCTGCTTGAAGTAATACAGCAGATAAGAACATGGCAGCAGATTCAACGAACGAATTAAGCCCTCACTAAATGGCAGATCGAAAATATTTTTTACAGAGGACGCTTTTAACTGCCCTGACGCCACACCATCAAGCAATTCGGCAAAGCGCGACTTGCCATTTATCAGCACATCCTTAATGAACACCATATGGTTGAGGCCGAACAAATCGATAGATAA  >  NC_000913/1817658‑1817921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A