Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F1 I2 R1	777	59.2	2955938	92.5%	2734242	106.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,434,929	C→T	A236A (GCG→GCA)	truA ←	tRNA pseudouridine(38‑40) synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,434,929	0	C	T	100.0%	265.8 / NA	81	A236A (GCG→GCA)	truA	tRNA pseudouridine(38‑40) synthase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (40/41); total (40/41)

AGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGCTTTAATATCTAC  >  NC_000913/2434795‑2435063

aGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCa                                                                                                                                    <  2:534934/139‑1 (MQ=255)

     gAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGtt                                                                                                                               <  2:23359/139‑1 (MQ=255)

      aaaTGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTc                                                                                                                              >  1:128970/1‑139 (MQ=255)

        aTGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGC‑TTTGCCGTTGCTGCTGCCAGCGTTCTGt                                                                                                                           <  2:1421656/139‑1 (MQ=255)

          gTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTc                                                                                                                          >  1:843223/1‑139 (MQ=255)

            tCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCt                                                                                                                        >  2:1439383/1‑139 (MQ=255)

               gAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCCGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTg                                                                                                                     <  1:904159/139‑1 (MQ=255)

                             ttAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCa                                                                                                                                    <  1:1458147/110‑1 (MQ=255)

                             ttAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCa                                                                                                                                    >  2:1458147/1‑110 (MQ=255)

                             ttAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAActct                                                                                                       >  1:975434/1‑139 (MQ=255)

                               aGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGc                                                                                                     >  1:599803/1‑139 (MQ=255)

                               aGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGc                                                                                                     >  2:331176/1‑139 (MQ=255)

                               aGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGc                                                                                                     >  2:1227418/1‑139 (MQ=255)

                                 tCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTa                                                                                                   >  1:132809/1‑139 (MQ=255)

                                    gCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATcc                                                                                                >  1:1433050/1‑139 (MQ=255)

                                               cGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGc                                                                                     >  2:311828/1‑139 (MQ=255)

                                                   cccATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGc                                                                                                                                  >  1:1233118/1‑90 (MQ=255)

                                                   cccATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGc                                                                                                                                  <  2:1233118/90‑1 (MQ=255)

                                                   cccATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTgg                                                                                  >  1:780519/1‑138 (MQ=255)

                                                   cccATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTgg                                                                                  <  2:780519/138‑1 (MQ=255)

                                                   cccATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGt                                                                                 >  1:1468032/1‑139 (MQ=255)

                                                                 tGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACt                                                                   >  2:1372219/1‑139 (MQ=255)

                                                                        tCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCa                                                            >  2:791572/1‑139 (MQ=255)

                                                                          aTACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAgg                                                          <  2:1468032/139‑1 (MQ=255)

                                                                             ccGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTg                                                       <  1:331176/139‑1 (MQ=255)

                                                                                 tCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTtgtg                                                                             <  1:890513/113‑1 (MQ=255)

                                                                                 tCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTtgtg                                                                             >  2:890513/1‑113 (MQ=255)

                                                                                 tCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGa                                                   <  2:843223/139‑1 (MQ=255)

                                                                                 tCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGa                                                   >  1:55594/1‑139 (MQ=255)

                                                                                   aGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGctct                                                                                          >  2:1098844/1‑98 (MQ=255)

                                                                                   aGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGctct                                                                                          <  1:1098844/98‑1 (MQ=255)

                                                                                   aGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACa                                                 <  2:1433050/139‑1 (MQ=255)

                                                                                   aGGGTAATCCACCGCGACCAGAAACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGc                                                                                     <  2:1383444/103‑1 (MQ=255)

                                                                                   aGGGTAATCCACCGCGACCAGAAACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGc                                                                                     >  1:1383444/1‑103 (MQ=255)

                                                                                    gggTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACaa                                                <  2:599803/139‑1 (MQ=255)

                                                                                        aaTCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATAtt                                            <  2:975434/139‑1 (MQ=255)

                                                                                          tCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTcc                                          <  1:649164/139‑1 (MQ=255)

                                                                                          tCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTcc                                          <  2:1188902/139‑1 (MQ=255)

                                                                                          tCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTcc                                          >  2:544345/1‑139 (MQ=255)

                                                                                          tCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATACTcc                                          >  2:649164/1‑139 (MQ=255)

                                                                                          tCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCCACTTCCATCAGGCTGCCGACAATATTcc                                          <  1:1439383/139‑1 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTg                                                                                                      <  1:131502/74‑1 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTg                                                                                                      >  2:131502/1‑74 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGctct                                                                                          <  1:1304168/86‑1 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGctct                                                                                          >  2:1304168/1‑86 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCt                                         <  2:1463877/135‑1 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCt                                         >  1:1463877/1‑135 (MQ=255)

                                                                                               cgcgACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGAcc                                     >  1:241633/1‑139 (MQ=255)

                                                                                                  gACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCata                                  <  1:544345/139‑1 (MQ=255)

                                                                                                  gACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCata                                  <  1:791572/139‑1 (MQ=255)

                                                                                                    ccAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCgg                                                                                      <  2:100707/85‑1 (MQ=255)

                                                                                                    ccAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCgg                                                                                      >  1:100707/1‑85 (MQ=255)

                                                                                                    ccAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTGGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATatg                                <  1:1343518/139‑1 (MQ=255)

                                                                                                     cAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATatga                               <  1:741124/139‑1 (MQ=255)

                                                                                                           cAGCCCTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCATCTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACa                         <  1:1365715/139‑1 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAAct                                                                                                         <  2:1415830/56‑1 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAAct                                                                                                         >  1:1415830/1‑56 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGcc                                                     >  2:1341711/1‑108 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGcc                                                     <  1:623873/108‑1 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGcc                                                     >  2:623873/1‑108 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGcc                                                     <  1:1341711/108‑1 (MQ=255)

                                                                                                              cccTTCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACaaaa                      >  1:306677/1‑139 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCt                                         >  2:949801/1‑116 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCt                                         <  1:949801/116‑1 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCata                                  >  2:170722/1‑123 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCata                                  <  1:170722/123‑1 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATatg                                <  1:381556/125‑1 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATatg                                >  2:381556/1‑125 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCAt                  >  2:167133/1‑139 (MQ=255)

                                                                                                                  tCCGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCAt                  >  2:97196/1‑139 (MQ=255)

                                                                                                                   ccGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGTCGACAATATTCCTGACCATATGATGTACAAAAGCAtt                 >  2:1112326/1‑139 (MQ=255)

                                                                                                                   ccGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCAtt                 <  2:306677/139‑1 (MQ=255)

                                                                                                                   ccGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAACAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACaa                                                >  2:1148101/1‑108 (MQ=255)

                                                                                                                   ccGCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAACAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACaa                                                <  1:1148101/108‑1 (MQ=255)

                                                                                                                     gCTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCg               <  1:1227418/139‑1 (MQ=255)

                                                                                                                      cTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATcc                                                                                                <  2:1241552/57‑1 (MQ=255)

                                                                                                                      cTTTTGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATcc                                                                                                >  1:1241552/1‑57 (MQ=255)

                                                                                                                        tttGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACa                                                 <  1:1601/102‑1 (MQ=255)

                                                                                                                        tttGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACa                                                 >  2:1601/1‑102 (MQ=255)

                                                                                                                          tGCCGTTGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGCTTTa          <  1:167133/139‑1 (MQ=255)

                                                                                                                               ttGCTGCTGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGCTTTAATATc     <  2:132809/139‑1 (MQ=255)

                                                                                                                                tgctgctgcCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGCTTTAATATCt    >  2:796124/1‑139 (MQ=255)

                                                                                                                                  ctgctgCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGCTTTAATATCTac  <  2:241633/139‑1 (MQ=255)

AGCCTGAAATGTTCCGAGCATTATTCTCGTTAGTCCGCCAGAAATAGCGGGCCCATTGGCGGTTTTGGAAGATCATACCGGTCAGGGTAATCCACCGCGACCAGATACAGCCCTTCCGCTTTTGCCGTTGCTGCCGCCAGCGTTCTGTCCTTTGCCGCCAGCAACTCTGCTATCCAGCTCTCCGGCTGGTTGTGGGCACCGACTTCCATCAGGCTGCCGACAATATTCCTGACCATATGATGTACAAAAGCATTCGCTTTAATATCTAC  >  NC_000913/2434795‑2435063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A