Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,770,987 |
T→C |
C103R (TGT→CGT) |
yfjS → |
CP4‑57 prophage, uncharacterized protein |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,770,987 | 0 | T | C | 100.0%
| 254.0
/ NA
| 70 | C103R (TGT→CGT) | yfjS | CP4‑57 prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (34/36); total (34/36) |
CAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTTGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGG > NC_000913/2770852‑2771118
|
caGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTa < 2:838428/139‑1 (MQ=255)
ggTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTAtt > 1:1424313/1‑139 (MQ=255)
ggCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTGCTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCg > 1:1052022/1‑139 (MQ=255)
gCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa > 2:761510/1‑139 (MQ=255)
gCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa < 1:589065/139‑1 (MQ=255)
tcATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAata < 1:1357130/139‑1 (MQ=255)
tGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGaa < 1:919545/134‑1 (MQ=255)
tGCAGGTCTTACGTACCAGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGaa > 2:919545/1‑134 (MQ=255)
cAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACg > 1:569156/1‑139 (MQ=255)
aGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 1:273702/139‑1 (MQ=255)
tCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGt > 1:974759/1‑139 (MQ=255)
cTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGtt > 2:1082922/1‑139 (MQ=255)
aCGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACg < 2:6054/139‑1 (MQ=255)
aCGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACg < 2:1424313/139‑1 (MQ=255)
aCGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACg < 2:721759/139‑1 (MQ=255)
tACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAc < 1:546407/139‑1 (MQ=255)
cccGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa > 1:976127/1‑127 (MQ=255)
cccGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAccc > 2:746956/1‑139 (MQ=255)
cccGTGAGTCGCCCGATGGTCGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 2:976127/127‑1 (MQ=255)
ccGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCg < 1:746956/139‑1 (MQ=255)
tGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGtat > 2:123204/1‑139 (MQ=255)
gAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGtata < 1:1082922/139‑1 (MQ=255)
gCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACgaaa > 2:898061/1‑139 (MQ=255)
tGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGaaaaa > 1:4540/1‑139 (MQ=255)
tGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACt > 2:1414104/1‑139 (MQ=255)
gCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACtt < 1:761510/139‑1 (MQ=255)
ggTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 1:333807/101‑1 (MQ=255)
ggTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa > 2:333807/1‑101 (MQ=255)
tactacTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATg < 1:898061/139‑1 (MQ=255)
actactATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGa > 1:572611/1‑139 (MQ=255)
ctaTCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGc < 2:572611/139‑1 (MQ=255)
tGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGaaaaa > 2:225970/1‑110 (MQ=255)
tGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGaaaaa < 1:225970/110‑1 (MQ=255)
ggTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTg > 2:622702/1‑139 (MQ=255)
ggTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTg > 2:1423496/1‑139 (MQ=255)
tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTAtt > 1:957520/1‑50 (MQ=255)
tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTAtt < 2:957520/50‑1 (MQ=255)
tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCa < 1:197944/132‑1 (MQ=255)
tAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCa > 2:197944/1‑132 (MQ=255)
atatGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATggg > 2:743471/1‑139 (MQ=255)
tatGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa < 1:622702/139‑1 (MQ=255)
tatGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa < 1:1423496/139‑1 (MQ=255)
atGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa > 1:213290/1‑74 (MQ=255)
atGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGa < 2:213290/74‑1 (MQ=255)
tGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACg < 2:1052022/139‑1 (MQ=255)
ggaggaGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAc < 1:822886/82‑1 (MQ=255)
ggaggaGAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGAc > 2:822886/1‑82 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa < 1:1023395/46‑1 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGa > 2:1023395/1‑46 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACg < 1:517063/120‑1 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACg > 2:517063/1‑120 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCaaa > 2:404587/1‑125 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCaaa < 1:404587/125‑1 (MQ=255)
aggagAAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGgct > 2:78992/1‑139 (MQ=255)
gaAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTa < 2:1268159/71‑1 (MQ=255)
gaAAACCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTa > 1:1268159/1‑71 (MQ=255)
aaaaCCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGATCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGa > 1:499408/1‑139 (MQ=255)
aaCCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATa < 2:499408/139‑1 (MQ=255)
aaCCGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATa < 2:974759/139‑1 (MQ=255)
cGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa > 2:633243/1‑124 (MQ=255)
cGTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGa < 1:633243/124‑1 (MQ=255)
gTCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCG‑ATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTc < 1:1347820/139‑1 (MQ=255)
tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAatat > 2:471161/1‑40 (MQ=255)
tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAatat < 1:471161/40‑1 (MQ=39)
tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCa < 2:366162/42‑1 (MQ=255)
tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCa > 1:366162/1‑42 (MQ=255)
tCCAGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTc > 1:285162/1‑139 (MQ=255)
aGCCGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCaaa < 2:569156/139‑1 (MQ=255)
cGCTGATGAATGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAAccc < 2:285162/139‑1 (MQ=255)
tGCGCTTCGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCgg > 2:1449868/1‑139 (MQ=255)
|
CAGGTTGGCTTCTCATCCGGTCTCACCCTGCAGGTCTTACGTACCCGTGAGTCGCCCGATGGTTGCGAGGGTGGCAGTTACTACTATCTGGTAGATATGGAGGAGAAAACCGTCCAGCCGCTGATGAATGCGCTTTGTATTGCCGACAATATCAAACTGGAATACCACGAAGTTACGGACCCGTATACGAAAGAAAAATACTTCGAATATTCCCATGACGGCAAACTGATGGGACGGCTGCTGATACCGTCAAACCCTGATAACCGG > NC_000913/2770852‑2771118
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A