Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I2 R1
|
777 |
59.2 |
2955938 |
92.5% |
2734242 |
106.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,549,000 |
T→C |
C65R (TGC→CGC) |
fimH → |
minor component of type 1 fimbriae |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,549,000 | 0 | T | C | 100.0%
| 218.7
/ NA
| 61 | C65R (TGC→CGC) | fimH | minor component of type 1 fimbriae |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (30/31); total (30/31) |
GTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAG > NC_000913/4548867‑4549112
|
gTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCAt < 1:207585/139‑1 (MQ=255)
gTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCAt > 1:538822/1‑139 (MQ=255)
aTGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATG‑GGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACa < 1:1203652/139‑1 (MQ=255)
tCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTcac > 2:489746/1‑139 (MQ=255)
ggTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGa > 2:90758/1‑107 (MQ=255)
ggTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGa < 1:90758/107‑1 (MQ=255)
tGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACa < 2:726331/115‑1 (MQ=255)
tGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACa > 1:726331/1‑115 (MQ=255)
ggCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 1:191088/139‑1 (MQ=255)
ggCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACAATGTCACACTGCAACGAGGCt > 1:634833/1‑139 (MQ=255)
ggCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGT‑GGGCAAAAACTGGTTGTGGAACTTTCGACGGCAATCTTTCGGCCAAAAGATTATCCGGGAACCATTACAGAATTTGTTCAACTGCAACCAgggtt > 2:565711/1‑136 (MQ=255)
cAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTa > 2:375423/1‑117 (MQ=255)
cAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTa < 1:375423/117‑1 (MQ=255)
gTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATggcg < 2:807135/139‑1 (MQ=255)
tGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCgtg < 1:1118387/139‑1 (MQ=255)
aaaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCAt < 2:82252/70‑1 (MQ=255)
aaaCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCAt > 1:82252/1‑70 (MQ=255)
aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCAt < 2:1312214/68‑1 (MQ=255)
aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCAt > 1:1312214/1‑68 (MQ=255)
aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATc > 1:1205399/1‑139 (MQ=255)
aCCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATc > 1:572868/1‑139 (MQ=255)
tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCg < 1:35013/76‑1 (MQ=255)
tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCg > 2:35013/1‑76 (MQ=255)
tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCgt > 2:445840/1‑129 (MQ=255)
tGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCgt < 1:445840/129‑1 (MQ=255)
gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATc < 1:5230/73‑1 (MQ=255)
gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATc > 2:5230/1‑73 (MQ=255)
gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGt < 1:483460/95‑1 (MQ=255)
gcgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGt > 2:483460/1‑95 (MQ=255)
cgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATggcg > 1:257455/1‑123 (MQ=255)
cgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATggcg < 2:257455/123‑1 (MQ=255)
cgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAAt > 2:440250/1‑137 (MQ=255)
cgcCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAAt < 1:440250/137‑1 (MQ=255)
tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTAAGGCGGCgt < 2:247922/121‑1 (MQ=255)
tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTAAGGCGGCgt > 1:247922/1‑121 (MQ=255)
tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCACCATAACGa > 2:246370/1‑61 (MQ=255)
tcgtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCACCATAACGa < 1:246370/61‑1 (MQ=255)
gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:1205399/139‑1 (MQ=255)
gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 1:1355256/139‑1 (MQ=255)
gtGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACAATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:634833/139‑1 (MQ=255)
ggggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt < 2:772784/95‑1 (MQ=255)
ggggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCt > 1:772784/1‑95 (MQ=255)
gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACa > 2:576523/1‑69 (MQ=255)
gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACa < 1:576523/69‑1 (MQ=255)
gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAat > 2:368943/1‑139 (MQ=255)
gggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAat > 1:1362639/1‑139 (MQ=255)
ggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCtt < 1:1068090/99‑1 (MQ=255)
ggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCtt > 2:1068090/1‑99 (MQ=255)
ggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTa < 2:381498/134‑1 (MQ=255)
ggCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTa > 1:381498/1‑134 (MQ=255)
cAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAAtata < 2:1362639/139‑1 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGa < 1:1282342/53‑1 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGa > 2:1282342/1‑53 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCgtg > 2:512954/1‑105 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCgtg < 1:512954/105‑1 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa > 1:820411/1‑124 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGa < 2:820411/124‑1 (MQ=255)
aaCCTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTg > 2:1180190/1‑139 (MQ=255)
ccTGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGc > 2:877627/1‑139 (MQ=255)
tGGTCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAg < 2:572868/139‑1 (MQ=255)
tCGTGGATCTTTCGACGCAAATCTTTCGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAg < 2:538822/139‑1 (MQ=255)
|
GTCATTCGCCTGTAAAACCGCCAATGGTACCGCTATCCCTATTGGCGGTGGCAGCGCCAATGTTTATGTAAACCTTGCGCCCGTCGTGAATGTGGGGCAAAACCTGGTCGTGGATCTTTCGACGCAAATCTTTTGCCATAACGATTATCCGGAAACCATTACAGACTATGTCACACTGCAACGAGGCTCGGCTTATGGCGGCGTGTTATCTAATTTTTCCGGGACCGTAAAATATAGTGGCAGTAG > NC_000913/4548867‑4549112
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
