Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I2 R1
|
766 |
64.2 |
3232166 |
90.9% |
2938038 |
104.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
965,917 |
A→G |
D533G (GAT→GGT) |
ycaI → |
ComEC family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 965,917 | 0 | A | G | 100.0%
| 246.6
/ NA
| 70 | D533G (GAT→GGT) | ycaI | ComEC family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (32/38); total (32/38) |
CGCTGTGGCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGATAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGCCGATGTTATG > NC_000913/965785‑966049
|
cGCTGTGGCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTgg > 2:749729/1‑139 (MQ=255)
tgGCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCGGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGcaac > 1:1466954/1‑139 (MQ=255)
gCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGcaacaa < 2:1141830/139‑1 (MQ=255)
aCCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGAtt < 1:749729/139‑1 (MQ=255)
cGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTg > 1:58488/1‑121 (MQ=255)
cGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTg < 2:779432/121‑1 (MQ=255)
cGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTg < 2:58488/121‑1 (MQ=255)
cGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTg > 1:779432/1‑121 (MQ=255)
gTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCAc < 1:925373/139‑1 (MQ=255)
gTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCAc > 2:611801/1‑139 (MQ=255)
tACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGCCTGGCATGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACAGGCATAATc > 1:1106051/1‑139 (MQ=255)
tGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGa > 2:1481621/1‑139 (MQ=255)
cTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGAt < 1:505937/107‑1 (MQ=255)
cTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGAt > 2:505937/1‑107 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCGGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGa < 2:1466954/139‑1 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATcccc > 2:33900/1‑110 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATcccc < 1:33900/110‑1 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCa > 1:398146/1‑118 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCa < 2:398146/118‑1 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGa > 1:1162779/1‑139 (MQ=255)
aTGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCCCCACTGGCATAATCTTGAACCGGa < 2:1100724/139‑1 (MQ=255)
gggCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCg < 1:458738/139‑1 (MQ=255)
gggCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCg > 2:475750/1‑139 (MQ=255)
ggCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGa > 1:353323/1‑133 (MQ=255)
ggCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGa < 2:353323/133‑1 (MQ=255)
gCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTg < 2:518026/139‑1 (MQ=255)
ggTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTg < 2:1160845/68‑1 (MQ=255)
ggTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTg > 1:1160845/1‑68 (MQ=255)
gTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAAc < 1:1045722/139‑1 (MQ=255)
gTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAAc < 1:475750/139‑1 (MQ=255)
gATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACAt < 2:695451/139‑1 (MQ=255)
tAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCa < 2:1368812/91‑1 (MQ=255)
tAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCa > 1:1368812/1‑91 (MQ=255)
tAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCg > 1:202911/1‑117 (MQ=255)
tAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCg < 2:202911/117‑1 (MQ=255)
tAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTAGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGa < 1:705115/112‑1 (MQ=255)
tAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTAGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGa > 2:705115/1‑112 (MQ=255)
aGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAg < 1:1413767/126‑1 (MQ=255)
aGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAg > 2:1413767/1‑126 (MQ=255)
gAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCa < 1:173266/139‑1 (MQ=255)
aaaCGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCAt < 2:679940/124‑1 (MQ=255)
aaaCGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCAt > 1:679940/1‑124 (MQ=255)
aaaCGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCAc > 1:866443/1‑139 (MQ=255)
cGATTCTCTATGGCACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCt < 1:64361/139‑1 (MQ=255)
cGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCt < 2:1162779/139‑1 (MQ=255)
ttCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCt < 2:1159186/136‑1 (MQ=255)
ttCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCt > 1:1159186/1‑136 (MQ=255)
ttCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGa < 2:866443/139‑1 (MQ=255)
cacaGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGAtt < 2:1297183/131‑1 (MQ=255)
cacaGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGAtt > 1:1297183/1‑131 (MQ=255)
aGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGc < 1:1069228/53‑1 (MQ=255)
aGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGc > 2:1069228/1‑53 (MQ=255)
aGGACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCat > 1:193894/1‑139 (MQ=255)
aGGACTGGCCTGGCCTGAAGGGGGTAGTGGGC‑ACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCAtt > 2:722831/1‑96 (MQ=255)
aGGACTGGCCTGGCCTGAAGGGGGTAGTGGGC‑ACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATg < 1:722831/97‑1 (MQ=255)
gACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAAGTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACCTCTGGATCACCGGGGAGGGCTGGATTCAATATTGCatat > 1:146973/1‑139 (MQ=255)
gACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACa < 1:677121/100‑1 (MQ=255)
gACTGGCCTGGCCTGAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACa > 2:677121/1‑100 (MQ=255)
gcctggcctgAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCCTGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGc < 2:1106051/139‑1 (MQ=255)
gcctggcctgAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGc < 1:611801/139‑1 (MQ=255)
ctggcctgAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGCCg < 1:1481621/139‑1 (MQ=255)
gcctgAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATg > 1:1405096/1‑86 (MQ=255)
gcctgAAGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATg < 2:1405096/86‑1 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCa < 1:325019/40‑1 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCa > 2:325019/1‑40 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCa > 1:350754/1‑113 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCa < 2:350754/113‑1 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATAtt > 1:1373204/1‑118 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATAtt < 2:1373204/118‑1 (MQ=255)
aaGGGGGTAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGCCGATGTTATg > 1:1582530/1‑139 (MQ=255)
|
CGCTGTGGCAAAAACCTCGACCTGACGAGTGGCAGCTGTACATGCTTGATGTCGGGCAAGGGCTGGCAATGGTGATAGCCAGAAACGGCAAAGCGATTCTCTATGACACAGGACTGGCCTGGCCTGAAGGGGATAGTGGGCAACAACTGATTATCCCCTGGCTCCACTGGCATAATCTTGAACCGGAAGGCGTTATTCTGAGCCATGAACATCTGGATCACCGGGGAGGGCTGGATTCAATATTGCATATATGGCCGATGTTATG > NC_000913/965785‑966049
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
