Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A7 F1 I2 R1 | 766 | 64.2 | 3232166 | 90.9% | 2938038 | 104.5 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,369,494 | C→T | A307T (GCA→ACA) | yjeH ← | putative transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,369,494 | 0 | C | T | 98.0% | 304.2 / ‑2.3 | 99 | A307T (GCA→ACA) | yjeH | putative transporter |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (48/49); total (49/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 | |||||||||||
ATAAAGATGCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGCCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATAACGCTCCTACACCGAACAA > NC_000913/4369358‑4369629 | ataaAGATGCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCa > 2:420930/1‑139 (MQ=255) aGATGCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTa < 1:102951/139‑1 (MQ=255) gATGCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAg > 1:94530/1‑139 (MQ=255) aTGCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGt > 2:471483/1‑139 (MQ=255) gCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTgg > 2:1329697/1‑139 (MQ=255) gCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTgg < 1:530380/139‑1 (MQ=255) ccATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt < 1:420930/139‑1 (MQ=255) taaGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt < 2:263882/123‑1 (MQ=255) taaGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt > 1:263882/1‑123 (MQ=255) cGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt > 2:960213/1‑117 (MQ=255) cGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt < 1:960213/117‑1 (MQ=255) cGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCga > 2:994822/1‑139 (MQ=255) cGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCga > 2:572033/1‑139 (MQ=255) gTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt < 2:239948/116‑1 (MQ=255) gTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt > 1:239948/1‑116 (MQ=255) gTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgac > 2:127292/1‑139 (MQ=255) gTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgac > 2:1070887/1‑139 (MQ=255) gTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgac > 2:1131108/1‑139 (MQ=255) tCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt > 1:600479/1‑115 (MQ=255) tCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt < 2:600479/115‑1 (MQ=255) tCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgacc > 2:965095/1‑139 (MQ=255) tCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgacc > 1:706036/1‑139 (MQ=255) gATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgaccagac < 2:706036/139‑1 (MQ=255) tGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGaccagaccag < 1:572033/139‑1 (MQ=255) aTCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggc > 1:314700/1‑139 (MQ=255) tAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg < 1:127292/139‑1 (MQ=255) tAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg < 1:1070887/139‑1 (MQ=255) aGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAg < 1:185170/139‑1 (MQ=255) gCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGc < 1:1343293/139‑1 (MQ=255) cATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGa < 1:357748/101‑1 (MQ=255) cATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGa > 2:357748/1‑101 (MQ=255) cATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 1:965095/139‑1 (MQ=255) cATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 2:94530/139‑1 (MQ=255) cATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGCCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgaccagac < 2:792122/124‑1 (MQ=255) cATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGCCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgaccagac > 1:792122/1‑124 (MQ=255) aTGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGctc < 1:471483/139‑1 (MQ=255) tGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg > 2:1169564/1‑132 (MQ=255) tGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg < 1:1169564/132‑1 (MQ=255) tGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGctct > 1:487438/1‑139 (MQ=255) tGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGctct < 1:994822/139‑1 (MQ=255) aTCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGta > 2:722445/1‑139 (MQ=255) aTCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGta > 2:197111/1‑139 (MQ=255) gTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 2:118826/125‑1 (MQ=255) gTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct > 1:118826/1‑125 (MQ=255) tGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgac > 2:372442/1‑104 (MQ=255) tGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCgac < 1:372442/104‑1 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt > 2:27351/1‑79 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGt < 1:27351/79‑1 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg < 2:1241380/117‑1 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg > 1:1241380/1‑117 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct > 2:1447915/1‑122 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct > 2:222560/1‑122 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 1:222560/122‑1 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 1:1447915/122‑1 (MQ=255) cTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTga > 2:387225/1‑139 (MQ=255) acacaGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTg > 2:1495405/1‑86 (MQ=255) acacaGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTg < 1:1495405/86‑1 (MQ=255) agcagcCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTa < 2:1338365/64‑1 (MQ=255) agcagcCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTa > 1:1338365/1‑64 (MQ=255) agcagcCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg < 1:776351/107‑1 (MQ=255) agcagcCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAggcgggcg > 2:776351/1‑107 (MQ=255) agcCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCAAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCa > 2:177361/1‑139 (MQ=255) gcCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAg < 2:314700/139‑1 (MQ=255) ccGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGc > 2:1213571/1‑106 (MQ=255) ccGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGc < 1:1213571/106‑1 (MQ=255) ccGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAgg > 2:248406/1‑139 (MQ=255) gAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGcc < 2:453041/139‑1 (MQ=255) aGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTGGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCaa > 1:1240991/1‑130 (MQ=255) aGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCaa < 2:1240991/130‑1 (MQ=255) cACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGa > 2:1192579/1‑139 (MQ=255) cATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGcc > 1:106635/1‑139 (MQ=255) ggCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGcc < 1:1039154/64‑1 (MQ=255) ggCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGcc > 2:1039154/1‑64 (MQ=255) ggCATTATTCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACg < 1:1329697/139‑1 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAg < 1:1468505/84‑1 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAg < 1:1383708/84‑1 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAg > 2:1468505/1‑84 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAg > 2:1383708/1‑84 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 1:1343316/86‑1 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct > 2:1343316/1‑86 (MQ=255) ttattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAgg < 1:722445/139‑1 (MQ=255) tattCGGGATATGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGc < 1:248406/139‑1 (MQ=255) tatGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATaa < 1:1131108/139‑1 (MQ=255) tatGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATaa < 1:1321641/139‑1 (MQ=255) tatGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATaa < 2:123642/139‑1 (MQ=255) atGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 1:615546/75‑1 (MQ=255) atGGCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct > 2:615546/1‑75 (MQ=255) ggCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAgg < 1:833770/62‑1 (MQ=255) ggCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAgg > 2:833770/1‑62 (MQ=255) ggCGAGAAGAGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATAACGc > 1:479663/1‑139 (MQ=255) gaagaGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct > 2:737390/1‑68 (MQ=255) gaagaGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGct < 1:737390/68‑1 (MQ=255) gaagaGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTgag > 2:1010815/1‑86 (MQ=255) gaagaGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTgag < 1:1010815/86‑1 (MQ=255) gaagaGAGGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATAACGCTCCTa < 2:106635/139‑1 (MQ=255) agGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTgag > 1:983721/1‑80 (MQ=255) agGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTgag < 2:983721/80‑1 (MQ=255) agGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATaa > 2:495334/1‑125 (MQ=255) agGCGTGTCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATaa < 1:495334/125‑1 (MQ=255) gtgtCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATAACGCTCCTACACCGaacaa < 1:387225/139‑1 (MQ=255) | ATAAAGATGCCATTGGCATAAATAATAAGAGCGTCCAGATTGATCTCTAAAGCATGAATCACCAAAGTGCTCACCACACAGCAGCCGAGCACCGCATTGAGGGCATTATTCGGGATATGGCGAGAAGAGAGGCGTGCCAGGTAGTGGTCAGGATTATGTTGCGCCTGCGACCAGACCAGGCGGGCGAAGCTCTGTATATAAATGTTGAGACTGGCAAAGCAGGCCAGATAGCCAATCACGCAGGCAATCCATAACGCTCCTACACCGAACAA > NC_000913/4369358‑4369629 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |