Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F1 I1 R1 770 51.4 2439994 93.8% 2288714 110.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,652,273 T→C pseudogene (723/1158 nt) intQ → pseudogene, Qin prophage, phage integrase family,Phage or Prophage Related

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,652,2730TC100.0% 254.4 / NA 72pseudogene (723/1158 nt)intQpseudogene, Qin prophage, phage integrase family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/36);  total (36/36)

GATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGT  >  NC_000913/1652140‑1652401
                                                                                                                                     |                                                                                                                                
gATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCg                                                                                                                             >  1:92663/1‑139 (MQ=255)
gATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCg                                                                                                                             >  2:206784/1‑139 (MQ=255)
     gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTc                                                                                                                        >  1:777142/1‑139 (MQ=255)
     gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTc                                                                                                                        >  2:1193770/1‑139 (MQ=255)
     gaggaCATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTc                                                                                                                        >  2:309723/1‑139 (MQ=255)
          cATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATg                                                                                                                   <  2:168953/139‑1 (MQ=255)
            tAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGAc                                                                                                                 <  1:883567/139‑1 (MQ=255)
            tAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGAc                                                                                                                 <  1:1193770/139‑1 (MQ=255)
               aTCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACAtt                                                                                                              >  1:248455/1‑139 (MQ=255)
                    aaaaaTGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACga                                                                                                         >  1:511920/1‑139 (MQ=255)
                         tGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTg                                                                                                    >  1:87003/1‑139 (MQ=255)
                             aCAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCa                                                                                                <  2:615018/139‑1 (MQ=255)
                             aCAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCa                                                                                                <  2:1042191/139‑1 (MQ=255)
                               aaTGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCaaa                                                                                              <  2:92663/139‑1 (MQ=255)
                                atgatgATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAag                                                                                             <  1:33110/139‑1 (MQ=255)
                                  gatgatCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAagag                                                                                           <  2:511920/139‑1 (MQ=255)
                                    tgatCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCa                                                                                         <  2:87003/139‑1 (MQ=255)
                                      atCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACGAAAGGGGCCACGCAACTTATTAAGCCCGCTATCGTCGCCCTTTGGAGTCAGACGACATTAAAGAGATTGAGAAAAGAGCata                                                                                       >  1:615018/1‑139 (MQ=255)
                                      atCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCata                                                                                       >  2:210544/1‑139 (MQ=255)
                                         aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGAt                                                                                                                    >  1:508690/1‑107 (MQ=255)
                                         aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGAt                                                                                                                    <  2:508690/107‑1 (MQ=255)
                                         aGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCa                                                                                    <  2:248455/139‑1 (MQ=255)
                                           gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGccct                                                                                                                                >  1:195885/1‑93 (MQ=255)
                                           gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCTTCCGGAGTCAGATGAAATTAACGACGATAAGAAAAGAGCAAATCAtt                                                                                  >  2:889147/1‑139 (MQ=255)
                                           gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTaa                                                                                                            <  2:1086859/113‑1 (MQ=255)
                                           gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTaa                                                                                                            >  1:1086859/1‑113 (MQ=255)
                                           gagaAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAACAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCAtt                                                                                  >  1:157437/1‑139 (MQ=255)
                                                aTTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             >  1:538754/1‑139 (MQ=255)
                                                aTTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             >  1:77970/1‑139 (MQ=255)
                                                     gCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAATAGCATATCATTGATGtt                                                                            <  2:763168/135‑1 (MQ=255)
                                                     gCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGtt                                                                            >  1:763168/1‑135 (MQ=255)
                                                     gCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACt                                                                        <  2:77970/139‑1 (MQ=255)
                                                        aaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  2:777142/139‑1 (MQ=255)
                                                        aaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  2:632999/139‑1 (MQ=255)
                                                        aaaGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  1:309723/139‑1 (MQ=255)
                                                          aGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCaga                                                                   <  1:436359/139‑1 (MQ=255)
                                                          aGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCaga                                                                   <  1:206784/139‑1 (MQ=255)
                                                                tttCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     >  1:715232/1‑131 (MQ=255)
                                                                tttCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCa                                                                     <  2:715232/131‑1 (MQ=255)
                                                                      ggTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcaga                                                       >  1:686975/1‑139 (MQ=255)
                                                                          ccAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACg                                                                                                          >  1:766655/1‑84 (MQ=255)
                                                                          ccAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACg                                                                                                          <  2:766655/84‑1 (MQ=255)
                                                                           cAAAAACACAGGCGGGAACCCATCGGGTCATTCAGCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCATATGACATTAACGACTCTGAGCAAAGAGCATCTCATTGATGTTCACTTCACAGAGTATGGcagaccaga                                                  >  1:210566/1‑139 (MQ=255)
                                                                           cAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacaga                                                  >  2:12365/1‑139 (MQ=255)
                                                                           cAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacaga                                                  >  2:390623/1‑139 (MQ=255)
                                                                           cAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacaga                                                  <  2:989760/139‑1 (MQ=255)
                                                                            aaaaaCACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGcagaacagaa                                                 <  2:686975/139‑1 (MQ=255)
                                                                                    aGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             <  2:370829/103‑1 (MQ=255)
                                                                                    aGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGt                                                                             >  1:370829/1‑103 (MQ=255)
                                                                                    aGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGAAATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACaaaa                                         >  2:260076/1‑139 (MQ=255)
                                                                                              cAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCttt                               <  1:103682/139‑1 (MQ=255)
                                                                                                aTCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACt                                                                                                     >  2:88245/1‑67 (MQ=255)
                                                                                                aTCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACt                                                                                                     <  1:88245/67‑1 (MQ=255)
                                                                                                   gggTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGtttt                          <  1:12365/139‑1 (MQ=255)
                                                                                                     gTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGAt                                                                               <  1:182919/84‑1 (MQ=255)
                                                                                                     gTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGAt                                                                               >  2:182919/1‑84 (MQ=255)
                                                                                                     gTCATTCATCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTc                        <  1:210544/139‑1 (MQ=255)
                                                                                                        attcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGc                                                                                                 >  2:726971/1‑63 (MQ=255)
                                                                                                        attcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGc                                                                                                 <  1:392773/63‑1 (MQ=255)
                                                                                                        attcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGc                                                                                                 >  2:392773/1‑63 (MQ=255)
                                                                                                        attcatCTTATTAAGCCAGCAATCGACGCCCTCCGCAGTCAGATGACATTAACGAGACTGAGc                                                                                                 <  1:726971/63‑1 (MQ=255)
                                                                                                         ttcatCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAcc                    <  2:538754/139‑1 (MQ=255)
                                                                                                           catCTTATTAAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTg                  <  1:390623/139‑1 (MQ=255)
                                                                                                                  ttaAGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTc           >  2:45988/1‑139 (MQ=255)
                                                                                                                    aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAagag                                                                                           <  1:95560/57‑1 (MQ=255)
                                                                                                                    aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAagag                                                                                           >  2:95560/1‑57 (MQ=255)
                                                                                                                    aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAc                     <  1:275681/127‑1 (MQ=255)
                                                                                                                    aaGCCAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAAc                     >  2:275681/1‑127 (MQ=255)
                                                                                                                        cAGCAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCgag     >  2:731717/1‑139 (MQ=255)
                                                                                                                           cAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGt  >  2:897317/1‑139 (MQ=255)
                                                                                                                           cAATCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGt  >  1:76366/1‑139 (MQ=255)
                                                                                                                            aaTCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCttt                               >  1:252947/1‑109 (MQ=255)
                                                                                                                            aaTCGACGCCCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCttt                               <  2:252947/109‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                
GATGGGAGGACATAGATCTGAAAAATGGAACAATGATGATCAGGAGAAATTTAGCAAAAGACCGTTTCACGGTACCAAAAACACAGGCGGGAACCAATCGGGTCATTCATCTTATTAAGCCAGCAATCGACGCTCTCCGGAGTCAGATGACATTAACGAGACTGAGCAAAGAGCATATCATTGATGTTCACTTCAGAGAGTATGGCAGAACAGAAAAACAAAAATGCACCTTTGTTTTTCAACCTGAAGTGTCAGCGAGAGT  >  NC_000913/1652140‑1652401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A