Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F1 I2 R1 780 68.3 3343050 93.5% 3125751 102.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,745,362 T→C T256A (ACA→GCA)  ydhQ ← autotransporter adhesin‑related protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,745,3620TC100.0% 287.0 / NA 79T256A (ACA→GCA) ydhQautotransporter adhesin‑related protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (41/38);  total (41/38)

CTCTGCGCCATAACCAATAATCATTGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGTCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATAAATGGAT  >  NC_000913/1745231‑1745495
                                                                                                                                   |                                                                                                                                     
ctctGCGCCATAACCAATAATCATTGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCt                                                                                                                                >  2:137833/1‑139 (MQ=255)
               aataatCATTGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGttt                                                                                                                 >  1:116109/1‑139 (MQ=255)
                      aTTGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCa                                                                                                                                   >  2:82511/1‑114 (MQ=255)
                      aTTGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCa                                                                                                                                   <  1:82511/114‑1 (MQ=255)
                       ttGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGt                                                                                                         >  1:1020485/1‑139 (MQ=255)
                        tGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTa                                                                                                        >  2:527559/1‑139 (MQ=255)
                        tGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTa                                                                                                        <  1:1400569/139‑1 (MQ=255)
                        tGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTa                                                                                                        >  2:1400569/1‑139 (MQ=255)
                        tGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTa                                                                                                        >  1:1664161/1‑139 (MQ=255)
                              gcCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCa                                                                                                  >  2:199667/1‑139 (MQ=255)
                                  tCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCa                                                                                              >  2:234610/1‑139 (MQ=255)
                                       tAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCa                                                                                         >  2:622393/1‑139 (MQ=255)
                                          tGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATACACTTCAGcc                                                                                      <  1:1496814/139‑1 (MQ=255)
                                           gCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGccc                                                                                     <  2:1325575/139‑1 (MQ=255)
                                           gCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGccc                                                                                     <  2:116109/139‑1 (MQ=255)
                                            cAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCAt                                                                                                 <  2:1029118/126‑1 (MQ=255)
                                            cAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCAt                                                                                                 >  1:1029118/1‑126 (MQ=255)
                                            cAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCAc                                                                                             >  2:1481297/1‑130 (MQ=255)
                                            cAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCAc                                                                                             <  1:1481297/130‑1 (MQ=255)
                                            cAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCg                                                                                    <  1:527559/139‑1 (MQ=255)
                                            cAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCg                                                                                    >  2:1213984/1‑139 (MQ=255)
                                             aaCACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGa                                                                                   <  2:1664161/139‑1 (MQ=255)
                                                 cTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGaccac                                                                               >  1:301620/1‑139 (MQ=255)
                                                  tCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGaccacc                                                                              <  1:199667/139‑1 (MQ=255)
                                                    ccGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATg                                                                                                <  2:149234/119‑1 (MQ=255)
                                                    ccGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATg                                                                                                >  1:149234/1‑119 (MQ=255)
                                                    ccGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGAccaccca                                                                            >  1:225273/1‑139 (MQ=255)
                                                        tCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACAtt                                                                        <  1:688253/139‑1 (MQ=255)
                                                          aGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCa                                                                                                                                   >  1:162779/1‑78 (MQ=255)
                                                          aGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCa                                                                                                                                   <  2:162779/78‑1 (MQ=255)
                                                          aGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCa                                                                      <  2:920848/139‑1 (MQ=255)
                                                            ttCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCg                                                                                                     >  1:716567/1‑106 (MQ=255)
                                                            ttCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCg                                                                                                     <  2:716567/106‑1 (MQ=255)
                                                            ttCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACg                                                                    >  1:685174/1‑139 (MQ=255)
                                                            ttCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACg                                                                    >  1:446629/1‑139 (MQ=255)
                                                            ttCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACg                                                                    >  1:1366782/1‑139 (MQ=255)
                                                              cAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGa                                                                  <  1:833649/139‑1 (MQ=255)
                                                               aaCCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGAc                                                                 <  1:1213984/139‑1 (MQ=255)
                                                                    gTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGAccaccca                                                                            >  2:809936/1‑123 (MQ=255)
                                                                    gTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGAccaccca                                                                            <  1:809936/123‑1 (MQ=255)
                                                                    gTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGtt                                                            >  1:660819/1‑139 (MQ=255)
                                                                      gcgcGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGTGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAACCCGACCACCCACATTCACGGACAGGtttt                                                          >  2:1191517/1‑139 (MQ=255)
                                                                          gATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACTCACATTCACGGACAGGATTTGCGt                                                      <  2:1020485/139‑1 (MQ=255)
                                                                          gATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGt                                                      <  2:1366782/139‑1 (MQ=255)
                                                                           aTCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCg                                                                                    <  2:563285/108‑1 (MQ=255)
                                                                           aTCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCg                                                                                    >  1:563285/1‑108 (MQ=255)
                                                                               tCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTAc                                                 <  2:422789/139‑1 (MQ=255)
                                                                               tCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTAc                                                 >  2:853890/1‑139 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCa                                                                                                                                   <  1:1605197/50‑1 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCa                                                                                                                                   >  2:1605197/1‑50 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGcc                                                                                      <  1:1600873/95‑1 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGcc                                                                                      >  2:1600873/1‑95 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGac                                                                                  >  2:896503/1‑99 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGac                                                                                  <  1:896503/99‑1 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCgg                                              <  2:1422005/135‑1 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCgg                                              >  1:1422005/1‑135 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACt                                          >  1:789410/1‑139 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACt                                          >  1:423959/1‑139 (MQ=255)
                                                                                      cGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACt                                          >  2:1241864/1‑139 (MQ=255)
                                                                                         cAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTa                                       <  2:225273/139‑1 (MQ=255)
                                                                                            aaTTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCa                                                                                                             >  1:1668788/1‑66 (MQ=255)
                                                                                            aaTTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCa                                                                                                             <  2:1668788/66‑1 (MQ=255)
                                                                                            aaTTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTagag                                    >  2:326610/1‑139 (MQ=255)
                                                                                             aTTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGc                                   <  1:853890/139‑1 (MQ=255)
                                                                                                    tCCGCGCTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGc                            <  1:622393/139‑1 (MQ=255)
                                                                                                       gcgcTGGTGGGTGACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCAt                         <  1:326610/139‑1 (MQ=255)
                                                                                                                ggtgACAACAGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAAGTGTAGAGCTGAAGGCCATCCGTCCCCa                <  1:1191517/139‑1 (MQ=255)
                                                                                                                       acaGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCcaca                                                                          >  2:739213/1‑74 (MQ=255)
                                                                                                                       acaGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCcaca                                                                          <  1:739213/74‑1 (MQ=255)
                                                                                                                       acaGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGa                                                                  <  2:1610833/82‑1 (MQ=255)
                                                                                                                       acaGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGa                                                                  >  1:1610833/1‑82 (MQ=255)
                                                                                                                       acaGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATa         >  1:462078/1‑139 (MQ=255)
                                                                                                                        caGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGa                                                                                   >  1:918136/1‑64 (MQ=255)
                                                                                                                        caGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGa                                                                                   <  2:918136/64‑1 (MQ=255)
                                                                                                                         aGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATaaa       <  1:1241864/139‑1 (MQ=255)
                                                                                                                         aGGATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATaaa       <  2:423959/139‑1 (MQ=255)
                                                                                                                          ggATCACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATAAAt      >  2:1508054/1‑139 (MQ=255)
                                                                                                                              cACTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATAAATGGAt  <  2:685174/139‑1 (MQ=255)
                                                                                                                                cTGCCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCa                                                                                                  >  1:1282149/1‑41 (MQ=255)
                                                                                                                                   |                                                                                                                                     
CTCTGCGCCATAACCAATAATCATTGAAGCGCCGTCCAGTAATGCAACACTCCCGGTCAGTTCAACCGGTGCGCGATCTTCCTCTACGACAAAATTTTCGTCCGCGCTGGTGGGTGACAACAGGATCACTGTCCCACCTTGTATTACCGCGTTTTCCAGCGTACCGGCATGCACTTCAGCCCGACCACCCACATTCACGGACAGGTTTTGCGTCTTACCGGAACTGTAGAGCTGAAGGCCATCCGTCCCCAGACGATAAATGGAT  >  NC_000913/1745231‑1745495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A