Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F1 I2 R1 780 68.3 3343050 93.5% 3125751 102.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,964,697 G→A L118L (CTC→CTT)  flhA ← putative flagellar export pore protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,964,6970GA100.0% 247.3 / NA 77L118L (CTC→CTT) flhAputative flagellar export pore protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (40/37);  total (40/37)

CTTACCCGGCATACCATCGAGAACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACGAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGAA  >  NC_000913/1964562‑1964821
                                                                                                                                       |                                                                                                                             
cTTACCCGGCATACCATCGAGAACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAgg                                                                                                                            >  1:566400/1‑139 (MQ=255)
    cccGGCATACCATCGAGAACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGt                                                                                                                        >  1:980802/1‑139 (MQ=255)
          aTACCATCGAGAACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATTACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGa                                                                                                                  <  2:1128445/139‑1 (MQ=255)
                   agaACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa                                                                                                         >  1:1059026/1‑139 (MQ=255)
                   agaACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa                                                                                                         <  2:1059026/139‑1 (MQ=255)
                   agaACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa                                                                                                         >  2:907029/1‑139 (MQ=255)
                    gaACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa‑c                                                                                                       <  2:968172/139‑1 (MQ=255)
                       cAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa‑ccac                                                                                                    >  2:185368/1‑139 (MQ=255)
                        aaaGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACTAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa‑cc                                                                                                      <  2:946617/136‑1 (MQ=255)
                        aaaGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGa‑cc                                                                                                      >  1:946617/1‑136 (MQ=255)
                          aGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCg                                                                                                          <  1:866109/131‑1 (MQ=255)
                          aGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCg                                                                                                          >  2:866109/1‑131 (MQ=255)
                          aGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCtt                                                                                                 >  1:105031/1‑139 (MQ=255)
                                         cTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCcgccgccgc                                                                                  <  1:1517235/139‑1 (MQ=255)
                                          tGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 <  2:980802/139‑1 (MQ=255)
                                          tGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 <  2:105031/139‑1 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 >  1:84609/1‑132 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 <  2:84609/132‑1 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTa                                                                           >  2:1476838/1‑138 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTa                                                                           <  1:1476838/138‑1 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTAt                                                                          >  2:816331/1‑139 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTAt                                                                          >  1:634258/1‑139 (MQ=255)
                                                 cGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTAt                                                                          >  1:1190073/1‑139 (MQ=255)
                                                   cccGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAAc                                                                                                                >  2:244475/1‑100 (MQ=255)
                                                   cccGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAAc                                                                                                                <  1:244475/100‑1 (MQ=255)
                                                     cGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGccc                                                                      <  1:816331/139‑1 (MQ=255)
                                                      ggCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCt                                                                     <  2:566400/139‑1 (MQ=255)
                                                            tttGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCtt                                                                    <  2:1261879/134‑1 (MQ=255)
                                                            tttGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCtt                                                                    >  1:1261879/1‑134 (MQ=255)
                                                               ggTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTaaa                                                            <  2:1327350/139‑1 (MQ=255)
                                                                     gACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACg                                                                                                               >  1:1488237/1‑83 (MQ=255)
                                                                     gACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACg                                                                                                               <  2:1488237/83‑1 (MQ=255)
                                                                     gACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATa                                                      <  2:1190073/139‑1 (MQ=255)
                                                                     gACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATa                                                      <  2:1652603/139‑1 (MQ=255)
                                                                     gACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTCCCATTAAAATGATa                                                      >  1:1052384/1‑139 (MQ=255)
                                                                     gACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCAACAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATa                                                      >  1:1565271/1‑139 (MQ=255)
                                                                          tAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGt                                                 >  2:1501929/1‑139 (MQ=255)
                                                                              gTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGaa                                             <  2:1565271/139‑1 (MQ=255)
                                                                                tgatgaTCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTCCCATTAAAATGATACGGGTTGAAGc                                           <  2:1052384/139‑1 (MQ=255)
                                                                                 gatgatCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGcc                                          >  1:1645346/1‑139 (MQ=255)
                                                                                  atgatCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGa                                                                                                                  >  1:1408419/1‑67 (MQ=255)
                                                                                  atgatCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGa                                                                                                                  <  2:1408419/67‑1 (MQ=255)
                                                                                  atgatCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCAt                                                                >  2:986268/1‑116 (MQ=255)
                                                                                  atgatCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGtt                                                <  2:1643632/132‑1 (MQ=255)
                                                                                  atgatCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGtt                                                >  1:1643632/1‑132 (MQ=255)
                                                                                  atgatCACGAGAATGACAAACACCACGATACCGAAAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCAt                                                                <  1:986268/116‑1 (MQ=255)
                                                                                       cACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGACCCACCTTCCCTGCCGCcgccgcg                                                                                 >  1:1537629/1‑95 (MQ=255)
                                                                                       cACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGACCCACCTTCCCTGCCGCcgccgcg                                                                                 <  2:1537629/95‑1 (MQ=255)
                                                                                         cGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAg                                  >  1:1573016/1‑139 (MQ=255)
                                                                                           agaATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTg                                <  2:1645346/139‑1 (MQ=255)
                                                                                            gaATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATa                                                      <  2:512140/116‑1 (MQ=255)
                                                                                            gaATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATa                                                      >  1:512140/1‑116 (MQ=255)
                                                                                               tGACAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAg                            >  2:1540253/1‑139 (MQ=255)
                                                                                                 aCAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGAc                          >  1:1409214/1‑139 (MQ=255)
                                                                                                 aCAAACACCACGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGAc                          >  1:128865/1‑139 (MQ=255)
                                                                                                       accacGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACa                    <  1:907029/139‑1 (MQ=255)
                                                                                                        ccacGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 >  2:1671465/1‑77 (MQ=255)
                                                                                                        ccacGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 <  1:1671465/77‑1 (MQ=255)
                                                                                                           cGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAAc                                                                                                                >  2:17001/1‑44 (MQ=255)
                                                                                                           cGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAAc                                                                                                                <  1:17001/44‑1 (MQ=255)
                                                                                                           cGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGt                >  1:1394595/1‑139 (MQ=255)
                                                                                                           cGATACCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGt                >  1:46763/1‑139 (MQ=255)
                                                                                                               aCCGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTa            <  2:1573016/139‑1 (MQ=255)
                                                                                                                 cGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCaa                      <  2:709910/127‑1 (MQ=255)
                                                                                                                 cGATAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCaa                      >  1:709910/1‑127 (MQ=255)
                                                                                                                   aTAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGccc                                                                      <  1:891958/77‑1 (MQ=255)
                                                                                                                   aTAGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGccc                                                                      >  2:891958/1‑77 (MQ=255)
                                                                                                                     aGCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAaacaac      >  2:556652/1‑139 (MQ=255)
                                                                                                                      gCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 >  1:942246/1‑63 (MQ=255)
                                                                                                                      gCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCcgccgcg                                                                                 <  2:942246/63‑1 (MQ=255)
                                                                                                                      gCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAg                                            >  2:1663373/1‑100 (MQ=255)
                                                                                                                      gCGAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAg                                            <  1:1663373/100‑1 (MQ=255)
                                                                                                                        gAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGa   >  1:216716/1‑139 (MQ=255)
                                                                                                                        gAAATTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGa   <  1:185368/139‑1 (MQ=255)
                                                                                                                         aaaTTGCCACCAACAAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGaa  <  2:634258/139‑1 (MQ=255)
                                                                                                                               ccaccaACAAGGAAGTGACCGAACGCTTCGA‑CCACCTT‑CCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGaa  <  2:1224397/132‑1 (MQ=255)
                                                                                                                               ccaccaACAAGGAAGTGACCGAACGCTTCGA‑CCACCTT‑CCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGaa  >  1:1224397/1‑132 (MQ=255)
                                                                                                                                       |                                                                                                                             
CTTACCCGGCATACCATCGAGAACAAAGCGCGCACCCACTTCTGCGATACGCCCGGCACCTTTGGTAATGACCATAAAGTTGATGATCACGAGAATGACAAACACCACGATACCGATAGCGAAATTGCCACCAACGAGGAAGTGACCGAACGCTTCGA‑CCACCTTCCCTGCCGCCGCCGCGCCGGTATGCCCTTCCATTAAAATGATACGGGTTGAAGCCACGTTAAGTGCCAGACGCAACAGCGTGGTAAACAACAGAA  >  NC_000913/1964562‑1964821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A