Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F1 I2 R1 772 77.0 3769570 91.6% 3452926 105.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 548,249 G→A E524K (GAG→AAG)  fdrA → putative NAD(P)‑binding acyl‑CoA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913548,2490GA100.0% 251.3 / NA 76E524K (GAG→AAG) fdrAputative NAD(P)‑binding acyl‑CoA synthetase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/40);  total (36/40)

GCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTGGCGCAAGCCAA  >  NC_000913/548132‑548382
                                                                                                                     |                                                                                                                                     
gCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAAc                                                                                                                  <  1:1884015/139‑1 (MQ=255)
gCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAAc                                                                                                                  <  1:1829720/139‑1 (MQ=255)
gCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAAc                                                                                                                  <  2:1654339/139‑1 (MQ=255)
   aCCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCgg                                                                                                               <  1:1838599/139‑1 (MQ=255)
    ccTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGt                                                                                                              <  1:1313327/139‑1 (MQ=255)
     cTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAGAGCGCCAGCAAACCGGtt                                                                                                             >  2:1262641/1‑139 (MQ=255)
     cTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCGTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGtt                                                                                                             <  1:1799165/139‑1 (MQ=255)
      ttGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTtg                                                                                                            <  1:559201/139‑1 (MQ=255)
          tGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTtgtg                                                                                                          <  2:1547432/137‑1 (MQ=255)
          tGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTtgtg                                                                                                          >  1:1547432/1‑137 (MQ=255)
                     ttAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGt                                                                                             <  1:285328/139‑1 (MQ=255)
                             tCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACAGGAAAACGTGGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACAAAGGGTCGCCAGTc                                                                                     >  1:1157858/1‑139 (MQ=255)
                                gCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGcc                                                                                  >  1:625413/1‑139 (MQ=255)
                                 ctctCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGcc                                                                                                                         <  2:1345519/99‑1 (MQ=255)
                                 ctctCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGGTGTGCATTACCAATGGTTGCCAGttgtcg                                                                                 <  1:1092118/139‑6 (MQ=255)
                                 ctctCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTGTGCGCTGAAGCTACAAAGCGcc                                                                                                                         >  1:1345519/1‑99 (MQ=255)
                                  tctcGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCgg                                                                                >  2:172687/1‑139 (MQ=255)
                                     cGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTgg                                                                             <  1:1262641/139‑1 (MQ=255)
                                         tGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCaa                                                                                                                    <  1:627895/96‑1 (MQ=255)
                                         tGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCaa                                                                                                                    >  2:627895/1‑96 (MQ=255)
                                                 aGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCa                                                                                                        >  1:660913/1‑100 (MQ=255)
                                                 aGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCa                                                                                                        <  2:660913/100‑1 (MQ=255)
                                                   cAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTgg                                                               >  1:1245200/1‑139 (MQ=255)
                                                    aaCACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              <  2:625413/139‑1 (MQ=255)
                                                      cacacacCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAg                                                                                       >  2:789651/1‑112 (MQ=255)
                                                      cacacacCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAg                                                                                       <  1:789651/112‑1 (MQ=255)
                                                       acacacCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCg                                                           <  2:1096052/139‑1 (MQ=255)
                                                           acCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              <  2:142118/132‑1 (MQ=255)
                                                           acCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              >  1:142118/1‑132 (MQ=255)
                                                                cATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAAc                                                                                                                  <  1:1347318/75‑1 (MQ=255)
                                                                cATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAAc                                                                                                                  >  2:1347318/1‑75 (MQ=255)
                                                                cATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGt                                                          <  2:93967/131‑1 (MQ=255)
                                                                cATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGt                                                          >  1:93967/1‑131 (MQ=255)
                                                                 aTTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACAAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGaa                                                 >  2:1190056/1‑139 (MQ=255)
                                                                   tACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACg                                               <  1:172687/139‑1 (MQ=255)
                                                                     cTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCa                                                                                                                        <  2:864801/64‑1 (MQ=255)
                                                                     cTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCa                                                                                                                        >  1:864801/1‑64 (MQ=255)
                                                                       ggAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTg                                           >  2:1062512/1‑139 (MQ=255)
                                                                        gAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGc                                          >  2:1666279/1‑139 (MQ=255)
                                                                            aCGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATa                                      >  2:703229/1‑139 (MQ=255)
                                                                             cGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGtt                                                                                                             >  2:1789749/1‑67 (MQ=255)
                                                                             cGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGtt                                                                                                             <  1:1789749/67‑1 (MQ=255)
                                                                             cGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTg                                                                >  2:32911/1‑112 (MQ=255)
                                                                             cGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTg                                                                <  1:32911/112‑1 (MQ=255)
                                                                               tCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGc                                                                                                                                    <  2:866519/42‑1 (MQ=255)
                                                                               tCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGc                                                                                                                                    >  1:866519/1‑42 (MQ=255)
                                                                               tCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGc                                                                                                         >  2:455116/1‑69 (MQ=255)
                                                                               tCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGc                                                                                                         <  1:455116/69‑1 (MQ=255)
                                                                                  ccGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCg                                                                                 <  1:644524/90‑1 (MQ=255)
                                                                                  ccGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCg                                                                                 >  2:644524/1‑90 (MQ=255)
                                                                                  ccGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATa                                                                        >  1:503056/1‑99 (MQ=255)
                                                                                  ccGTGATTAACATCGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATa                                                                        <  2:503056/99‑1 (MQ=255)
                                                                                               cGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGa                                                  <  2:1133966/108‑1 (MQ=255)
                                                                                               cGGATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGa                                                  >  1:1133966/1‑108 (MQ=255)
                                                                                                 gATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              <  2:949961/94‑1 (MQ=255)
                                                                                                 gATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              >  1:949961/1‑94 (MQ=255)
                                                                                                 gATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCg                                                           >  1:503285/1‑97 (MQ=255)
                                                                                                 gATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCg                                                           <  2:503285/97‑1 (MQ=255)
                                                                                                 gATTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTCTACATc                 >  1:1366702/1‑139 (MQ=255)
                                                                                                  aTTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCa                                                                                                        >  1:1778400/1‑51 (MQ=255)
                                                                                                  aTTACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCa                                                                                                        <  2:1778400/51‑1 (MQ=255)
                                                                                                   ttACGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTCTACATCAg               <  2:1366702/139‑1 (MQ=255)
                                                                                                      cGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTgg            >  2:1222615/1‑139 (MQ=255)
                                                                                                      cGCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTgg            >  1:1428527/1‑139 (MQ=255)
                                                                                                       gCAGCTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTGgc           <  2:709797/139‑1 (MQ=255)
                                                                                                           cTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGt                                                                                             >  2:1557785/1‑53 (MQ=255)
                                                                                                           cTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGt                                                                                             <  1:1557785/53‑1 (MQ=255)
                                                                                                           cTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              >  2:1026027/1‑84 (MQ=255)
                                                                                                           cTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGc                                                              <  1:1026027/84‑1 (MQ=255)
                                                                                                           cTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATa                                      <  1:1239498/108‑1 (MQ=255)
                                                                                                           cTTTGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATa                                      >  2:1239498/1‑108 (MQ=255)
                                                                                                             ttGCGCTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTGGCGCAAGc     <  1:703229/139‑1 (MQ=255)
                                                                                                               gcgcTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTGGCGCAAGCCa   <  2:1720969/139‑1 (MQ=255)
                                                                                                                cgcTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGa                                                  >  1:1393546/1‑91 (MQ=255)
                                                                                                                cgcTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGa                                                  <  2:1393546/91‑1 (MQ=255)
                                                                                                                cgcTGAAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTGGCGCAAGCCaa  >  1:1629784/1‑139 (MQ=255)
                                                                                                                     |                                                                                                                                     
GCCACCTTGCTGGCGGCAGCGTTAATTCATCCGCTCTCGCCTGCCGCACAGCAACACACACCGTCATTACTGGAAAACGTCGCCGTGATTAACATCGGATTACGCAGCTTTGCGCTGGAGCTACAAAGCGCCAGCAAACCGGTTGTGCATTACCAATGGTCGCCAGTCGCCGGTGGCAATAAAAAACTGGCTCGTTTATTAGAACGTTTGCAATAAGGGGTTCCCATGTTTACATCAGTGGCGCAAGCCAA  >  NC_000913/548132‑548382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A