Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F1 I2 R1	772	77.0	3769570	91.6%	3452926	105.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,510,886	G→A	419 (TAG→TAA)	yfeO →	putative ion channel protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,510,886	0	G	A	100.0%	316.2 / NA	96	419 (TAG→TAA)	yfeO	putative ion channel protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (45/51); total (45/51)

GTTGTACCCAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAGCAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATAACAATGTTCAGGTCACTGTTT  >  NC_000913/2510758‑2511018

gTTGTACCCAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGc                                                                                                                            <  1:537149/139‑1 (MQ=255)

 ttGTACCCAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  2:397502/139‑1 (MQ=255)

 ttGTACCCAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  1:610591/139‑1 (MQ=255)

 ttGTACCCAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  1:1315934/139‑1 (MQ=255)

      cccAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCt                                                                                                                      >  2:393356/1‑139 (MQ=255)

       ccAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCtt                                                                                                                     <  1:1748606/139‑1 (MQ=255)

         aaTACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   <  2:655703/139‑1 (MQ=255)

         aaTACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   <  1:1858528/139‑1 (MQ=255)

         aaTACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   <  1:1665126/139‑1 (MQ=255)

              cacaTTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   <  1:1430819/134‑1 (MQ=255)

              cacaTTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   >  2:1430819/1‑134 (MQ=255)

              cacaTTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGAtt                                                                                                              >  2:1021561/1‑139 (MQ=255)

               acaTTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGAttt                                                                                                             <  2:1538314/139‑1 (MQ=255)

               acaTTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGAttt                                                                                                             <  1:1021561/139‑1 (MQ=255)

                caTTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTa                                                                                                            >  2:742575/1‑139 (MQ=255)

                   tGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCAAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAaga                                                                                                         >  1:1139869/1‑139 (MQ=255)

                           ctgctCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGc                                                                                                 >  2:1189881/1‑139 (MQ=255)

                               tctGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCgatg                                                                                             >  1:190028/1‑139 (MQ=255)

                                   tATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATAc                                                                                         >  1:1351151/1‑139 (MQ=255)

                                   tATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATAc                                                                                         >  1:419897/1‑139 (MQ=255)

                                    aTCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACg                                                                                        <  1:74429/139‑1 (MQ=255)

                                          aTGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCtt                                                                                  >  2:1152415/1‑139 (MQ=255)

                                             cTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGctc                                                                                                                          >  2:707837/1‑96 (MQ=255)

                                             cTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGctc                                                                                                                          <  1:707837/96‑1 (MQ=255)

                                             cTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTAc                                                                               <  2:1351151/139‑1 (MQ=255)

                                             cTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTAc                                                                               >  2:1512668/1‑139 (MQ=255)

                                             cTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTAc                                                                               >  2:182435/1‑139 (MQ=255)

                                             cTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTAc                                                                               >  1:1613785/1‑139 (MQ=255)

                                              ttCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTAcc                                                                              <  2:419897/139‑1 (MQ=255)

                                               tCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCt                                                                             <  1:741305/139‑1 (MQ=255)

                                               tCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCt                                                                             <  1:182435/139‑1 (MQ=255)

                                                ccGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTAt                                                                                                    <  1:1434229/115‑1 (MQ=255)

                                                ccGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTAt                                                                                                    >  2:1434229/1‑115 (MQ=255)

                                                   gCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACaaa                                                                                                                                  <  1:832245/82‑1 (MQ=255)

                                                   gCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACaaa                                                                                                                                  >  2:832245/1‑82 (MQ=255)

                                                   gCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           >  2:1477565/1‑89 (MQ=255)

                                                   gCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  1:1477565/89‑1 (MQ=255)

                                                    cATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCg                                                                        <  1:1447051/139‑1 (MQ=255)

                                                       ggCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTaa                                                                     >  2:516487/1‑139 (MQ=255)

                                                            ttattaGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTg                                                                <  1:709965/139‑1 (MQ=255)

                                                             tattaGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTcc                                                                           <  1:76717/127‑1 (MQ=255)

                                                             tattaGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTcc                                                                           >  2:76717/1‑127 (MQ=255)

                                                                  gCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTaa                                                          >  2:1509005/1‑139 (MQ=255)

                                                                   cAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGACGATACGGGGCATTACCTCCCCGTAATATTGCGTTAAc                                                         >  1:1197981/1‑139 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  2:1252350/70‑1 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           >  1:1252350/1‑70 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGAttt                                                                                                             >  2:389223/1‑84 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGAttt                                                                                                             <  1:389223/84‑1 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATa                                                                                          <  1:1730286/103‑1 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATa                                                                                          >  2:1730286/1‑103 (MQ=255)

                                                                      gTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAgg                                                      >  1:1304448/1‑139 (MQ=255)

                                                                       tAAGCCGATGATGATGGTTCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAgg                                                      <  2:827876/139‑1 (MQ=255)

                                                                             gatgatgatGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   <  2:61739/71‑1 (MQ=255)

                                                                             gatgatgatGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   >  1:61739/1‑71 (MQ=255)

                                                                              atgatgatgG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           >  2:1479979/1‑62 (MQ=255)

                                                                              atgatgatgG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  1:1479979/62‑1 (MQ=255)

                                                                                gatgatgG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           <  2:883579/60‑1 (MQ=255)

                                                                                gatgatgG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGct                                                                                                                           >  1:883579/1‑60 (MQ=255)

                                                                                     tgG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTAAGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCg                                       >  1:26006/1‑139 (MQ=255)

                                                                                      gg‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGa                                      <  1:742575/139‑1 (MQ=255)

                                                                                      gg‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGa                                      <  2:1533212/139‑1 (MQ=255)

                                                                                         tCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAat                                                                    <  1:754409/107‑1 (MQ=255)

                                                                                         tCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAat                                                                    >  2:754409/1‑107 (MQ=255)

                                                                                         tCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGc                                    <  1:1189881/139‑1 (MQ=255)

                                                                                         tCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGc                                    >  1:1875204/1‑139 (MQ=255)

                                                                                          cAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCg                                   <  2:718645/139‑1 (MQ=255)

                                                                                            aTCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGc                                                                                                                            >  2:1791007/1‑48 (MQ=255)

                                                                                            aTCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGc                                                                                                                            <  1:1791007/48‑1 (MQ=255)

                                                                                            aTCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   >  2:518515/1‑57 (MQ=255)

                                                                                            aTCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTa                                                                                                                   <  1:518515/57‑1 (MQ=255)

                                                                                            aTCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTg                                 >  2:529327/1‑139 (MQ=255)

                                                                                             tCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCga                                                                                               <  2:425024/76‑1 (MQ=255)

                                                                                             tCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCga                                                                                               >  1:425024/1‑76 (MQ=255)

                                                                                               gTCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAACAATGCTCTCCTTTATGATTTAAGAGTCATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGACTTCGAGCGTGAAg                              <  2:1139869/139‑1 (MQ=255)

                                                                                                tCCGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAgg                             <  1:516487/139‑1 (MQ=255)

                                                                                                  cGAATCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAg                                     >  1:1094580/1‑129 (MQ=255)

                                                                                                  cGAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAg                                     <  2:1094580/129‑1 (MQ=255)

                                                                                                   gAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACgg                                                                                       <  2:1733673/78‑1 (MQ=255)

                                                                                                   gAAGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACgg                                                                                       >  1:1733673/1‑78 (MQ=255)

                                                                                                     aGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGa                                      <  2:776053/125‑1 (MQ=255)

                                                                                                     aGCAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGa                                      >  1:776053/1‑125 (MQ=255)

                                                                                                       cAACAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATaa                      <  1:393356/139‑1 (MQ=255)

                                                                                                         aCAGCCACCCCACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATAACa                    <  1:1152415/139‑1 (MQ=255)

                                                                                                                 cccACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATAc                                                                                         >  2:715646/1‑62 (MQ=255)

                                                                                                                 cccACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATAc                                                                                         <  1:715646/62‑1 (MQ=255)

                                                                                                                 cccACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACgg                                                                                       <  2:402686/64‑1 (MQ=255)

                                                                                                                 cccACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACgg                                                                                       >  1:402686/1‑64 (MQ=255)

                                                                                                                   cACGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATAACAATGTTCAGGt          <  1:142925/139‑1 (MQ=255)

                                                                                                                     cGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCt                                                                             >  2:487243/1‑70 (MQ=255)

                                                                                                                     cGATAACGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCt                                                                             <  1:487243/70‑1 (MQ=255)

                                                                                                                           cGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGga                            >  2:1687734/1‑113 (MQ=255)

                                                                                                                           cGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGga                            <  1:1687734/113‑1 (MQ=255)

                                                                                                                           cGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATAACAATGTTCAGGTCACTGttt  >  1:364815/1‑139 (MQ=255)

                                                                                                                           cGTTTAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATAACAATGTTCAGGTCACTGttt  >  1:18159/1‑139 (MQ=255)

                                                                                                                             tttAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAg                              >  2:849078/1‑109 (MQ=255)

                                                                                                                             tttAACAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAg                              <  1:849078/109‑1 (MQ=255)

GTTGTACCCAATACCACATTGCTACCGCTGCTCTGTATCGTCATGCTTCCGGCATGGCTGTTATTAGCAGGTAAGCCGATGATGATGG‑TCAATCGTCCGAAGCAACAGCCACCCCACGATAACGTTTAGCAAAAAATGCTCTCCTTTATGATTTAAGAGTTATGGCGATGATACGGGGCTTTACCTCCCCGTAATATTGCGTTAACAGGCCGCTGACGGCTTCGAGCGTGAAGGAGAATAACAATGTTCAGGTCACTGTTT  >  NC_000913/2510758‑2511018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A