Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F1 I2 R1
|
772 |
77.0 |
3769570 |
91.6% |
3452926 |
105.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,700,883 |
A→G |
I39T (ATC→ACC) |
acpS ← |
holo‑[acyl‑carrier‑protein] synthase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,700,883 | 0 | A | G | 100.0%
| 385.0
/ NA
| 107 | I39T (ATC→ACC) | acpS | holo‑[acyl‑carrier‑protein] synthase 1 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (52/55); total (52/55) |
Only 100 of 107 total aligned reads displayed.
GCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACGCGCTTC > NC_000913/2700749‑2701012
|
gCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGc < 1:415148/139‑1 (MQ=255)
gAATACTTCAAATTGATCAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGttt < 2:1155162/139‑2 (MQ=255)
aCTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGc > 2:1512996/1‑139 (MQ=255)
ttCAAATTGGTTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCtt > 1:1324345/1‑139 (MQ=255)
ttCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCa > 2:683023/1‑126 (MQ=255)
ttCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCtt > 2:987011/1‑139 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCa > 2:951054/1‑124 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCa < 1:951054/124‑1 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTaa > 2:1631113/1‑139 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTaa > 1:541636/1‑139 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTaa > 2:1609005/1‑139 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTaa > 2:858533/1‑139 (MQ=255)
cAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCAAGGTAGCCCATTCGTTATCGCTTaa > 2:1215306/1‑139 (MQ=255)
aaaTTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAAt > 1:233230/1‑139 (MQ=255)
aTTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATAc > 2:1743737/1‑139 (MQ=255)
aTTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATAc > 1:23274/1‑139 (MQ=255)
ttAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACgcggc > 1:1000678/1‑139 (MQ=255)
aCGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGc < 2:1512093/139‑1 (MQ=255)
aGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 2:1324345/139‑1 (MQ=255)
tGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGc > 1:643507/1‑97 (MQ=255)
tGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGc < 2:643507/97‑1 (MQ=255)
tGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCCGGCGATCAcc > 2:1685259/1‑139 (MQ=255)
gATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGAt < 2:1457828/139‑1 (MQ=255)
aTCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGc < 2:1785171/92‑1 (MQ=255)
aTCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACgcgg < 2:1366537/117‑1 (MQ=255)
aTCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACgcgg > 1:1366537/1‑117 (MQ=255)
aTCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATc > 1:1815806/1‑139 (MQ=255)
cccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCTATTCGTTATCGc > 2:1119903/1‑104 (MQ=255)
cccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGc < 1:1119903/104‑1 (MQ=255)
cccGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCgg > 1:1664581/1‑139 (MQ=255)
tGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACgcggc > 2:1182736/1‑111 (MQ=255)
tGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAgg < 1:1804643/119‑1 (MQ=255)
tGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAgg > 2:1804643/1‑119 (MQ=255)
tGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGAt < 1:1743737/139‑1 (MQ=255)
tGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGAt < 1:987011/139‑1 (MQ=255)
tGCCAAACGCTTCTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACgcggc < 1:1182736/111‑1 (MQ=255)
ccAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAAAACGCGGCGTGACAGGCGATCACCGGATCGGGCGATCa > 1:1197239/1‑139 (MQ=255)
aaaCGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCAcc > 2:1154105/1‑139 (MQ=255)
ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGAt < 2:371195/127‑1 (MQ=255)
ttGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGAt > 1:371195/1‑127 (MQ=255)
gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcgag < 2:742563/139‑1 (MQ=255)
gcGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACACGGCGTGCCAGGCGATCACCCGATCGGGCGATCACCGCTTCGATgcgag < 1:1215306/139‑1 (MQ=255)
cGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCa < 1:1434312/123‑1 (MQ=255)
cGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCa > 2:1434312/1‑123 (MQ=255)
ggCTTCTTTCATAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTACCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcgagcg < 1:1650228/139‑1 (MQ=255)
gCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCAtt < 2:1449925/70‑1 (MQ=255)
gCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCAtt > 1:1449925/1‑70 (MQ=255)
gCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcgagcga < 1:1416778/139‑1 (MQ=255)
gCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcgagcga > 2:1770860/1‑139 (MQ=255)
gCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATgcgagcga > 1:164861/1‑139 (MQ=255)
cttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAt < 2:1664581/139‑1 (MQ=255)
cttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAt < 1:1154105/139‑1 (MQ=255)
ttcttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAtc < 1:297850/139‑1 (MQ=255)
cttTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAtctc < 2:23274/139‑1 (MQ=255)
aGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTc < 2:53948/117‑1 (MQ=255)
aGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTc > 1:53948/1‑117 (MQ=255)
cAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCAtt < 2:1261352/57‑1 (MQ=255)
cAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCAtt > 1:1261352/1‑57 (MQ=255)
cAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 2:729855/87‑1 (MQ=255)
cAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc > 1:729855/1‑87 (MQ=255)
cAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCcaca > 1:989471/1‑134 (MQ=255)
aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATcc < 1:1685259/139‑1 (MQ=255)
aaaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATcc < 1:381478/139‑1 (MQ=255)
aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCg < 2:1667918/86‑1 (MQ=255)
aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCg > 1:1667918/1‑86 (MQ=255)
aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGc < 2:115250/101‑1 (MQ=255)
aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGc > 1:115250/1‑101 (MQ=255)
aaaCGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCg > 2:266162/1‑139 (MQ=255)
cGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGc < 2:1433598/139‑1 (MQ=255)
gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGcc < 2:1815806/139‑1 (MQ=255)
gCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGcc < 1:1770860/139‑1 (MQ=255)
cTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCt < 2:164861/139‑1 (MQ=255)
cTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCt < 1:1609005/139‑1 (MQ=255)
cTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCt < 2:541636/139‑1 (MQ=255)
cGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCt < 1:1303609/136‑1 (MQ=255)
cGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCt > 2:1303609/1‑136 (MQ=255)
aaaaCGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 2:447382/71‑1 (MQ=255)
aaaaCGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc > 1:447382/1‑71 (MQ=255)
aaaCGCACCGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAata < 1:1772315/139‑1 (MQ=255)
cGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc > 1:1724745/1‑62 (MQ=255)
cGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGc < 2:1724745/62‑1 (MQ=255)
cGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAatat > 2:183026/1‑132 (MQ=255)
cGGCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAatat < 1:183026/132‑1 (MQ=255)
ggCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCtt > 1:825733/1‑88 (MQ=255)
ggCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCtt < 2:825733/88‑1 (MQ=255)
ggCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAt > 1:684894/1‑101 (MQ=255)
ggCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAt < 2:684894/101‑1 (MQ=255)
gCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGc < 1:1880244/117‑1 (MQ=255)
gCTGGTGGTGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGc > 2:1880244/1‑117 (MQ=255)
ggtggtGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc < 2:1356655/61‑1 (MQ=255)
ggtggtGCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATc > 1:1356655/1‑61 (MQ=255)
tggtgCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCAcg < 1:1631113/139‑1 (MQ=255)
ggtgCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAt > 1:1475285/1‑94 (MQ=255)
ggtgCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAt < 2:1475285/94‑1 (MQ=255)
ggtgCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCAcgc < 1:1287436/139‑1 (MQ=255)
tgCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAGTATCCGTGCCTAAACCTAATATTGCCAt < 2:1165153/128‑1 (MQ=255)
tgCGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCAt > 1:1165153/1‑128 (MQ=255)
cGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAtc > 1:944315/1‑91 (MQ=255)
cGTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGAtc < 2:944315/91‑1 (MQ=255)
gTTTTCCAGGTAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACGCGCTTc < 2:233230/139‑1 (MQ=255)
|
GCTCATCATTGAATACTTCAAATTGATTAAACGCCAGACCATTGCGGATCCCGGTGCCAAACGCTTTTGCTGCGGCTTCTTTCACAGCAAAACGCTTCGCCAGAAAACGCACCGGCTGGTGGTGCGTTTTCCAGATAGCCCATTCGTTATCGCTTAATACGCGGCGTGCCAGGCGATCACCGGATCGGGCGATCACCGCTTCGATGCGAGCGATCTCCACAATATCCGTGCCTAAACCTAATATTGCCATTAGCCACGCGCTTC > NC_000913/2700749‑2701012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
