Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A5 F1 I2 R1 | 772 | 77.0 | 3769570 | 91.6% | 3452926 | 105.3 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,343,891 | A→G | D171G (GAC→GGC) | lptA → | lipopolysaccharide export ABC transporter periplasmic binding protein, Lipid A binding protein, LPS export and assembly protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,343,891 | 0 | A | G | 100.0% | 309.2 / NA | 86 | D171G (GAC→GGC) | lptA | lipopolysaccharide export ABC transporter periplasmic binding protein, Lipid A binding protein, LPS export and assembly protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (43/43); total (43/43) | |||||||||||
GCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGACAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGA > NC_000913/3343758‑3344016 | gCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCaaaa < 2:299680/139‑1 (MQ=255) cTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCaaaaa > 2:1337513/1‑139 (MQ=255) tCTGCAGCAGGTCGATGGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAaacaac > 2:1711859/1‑139 (MQ=255) cagcagGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAg > 1:1095711/1‑139 (MQ=255) gTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGa > 1:284690/1‑139 (MQ=255) gTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGa > 2:1703935/1‑139 (MQ=255) gATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 1:1703935/139‑1 (MQ=255) gATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 2:623405/139‑1 (MQ=255) gATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 1:889855/139‑1 (MQ=255) cAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 1:265688/139‑1 (MQ=255) cAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 1:52366/139‑1 (MQ=255) aCATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGcaca > 1:1584944/1‑139 (MQ=255) gATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca < 1:61779/109‑1 (MQ=255) gATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca > 2:61779/1‑109 (MQ=255) aTAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGa > 2:174182/1‑117 (MQ=255) aTAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGa < 1:174182/117‑1 (MQ=255) aTAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGtaa > 2:734441/1‑139 (MQ=255) tCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTaattaatt > 2:125662/1‑139 (MQ=255) cTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 2:1012901/111‑1 (MQ=255) cTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc > 1:1012901/1‑111 (MQ=255) cTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGt < 1:340662/139‑1 (MQ=255) tACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCaa > 1:1552520/1‑89 (MQ=255) tACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCaa < 2:1552520/89‑1 (MQ=255) cTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca < 2:1416275/94‑1 (MQ=255) cTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca > 1:1416275/1‑94 (MQ=255) cTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATgg > 1:1807612/1‑139 (MQ=255) cTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATgg < 2:347204/139‑1 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGc > 1:1631837/1‑98 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGc < 2:1631837/98‑1 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca > 2:1511631/1‑110 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca > 1:950301/1‑110 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 2:950301/110‑1 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 1:1511631/110‑1 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGt > 2:89070/1‑133 (MQ=255) tGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGt < 1:89070/133‑1 (MQ=255) gTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGt < 2:1129075/120‑1 (MQ=255) gTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGt > 1:1129075/1‑120 (MQ=255) gTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCaa > 1:1612822/1‑139 (MQ=255) tGAAAGAGCAGAAAATGTAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 2:494399/107‑1 (MQ=255) tGAAAGAGCAGAAAATGTAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca > 1:494399/1‑107 (MQ=255) tGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGc > 1:753089/1‑95 (MQ=255) tGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGc < 2:753089/95‑1 (MQ=255) gAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACa > 1:490630/1‑139 (MQ=255) agagCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCaaaaa < 1:1020222/81‑1 (MQ=255) agagCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCaaaaa > 2:1020222/1‑81 (MQ=255) agagCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTa > 2:402886/1‑139 (MQ=255) gagCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTaa < 1:1337513/139‑1 (MQ=255) gagCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTaa < 1:402886/139‑1 (MQ=255) cAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTg > 1:780637/1‑139 (MQ=255) aGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 2:1063641/98‑1 (MQ=255) aGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca > 1:1063641/1‑98 (MQ=255) aGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 2:291163/84‑1 (MQ=255) aGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc > 1:291163/1‑84 (MQ=255) tttCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCa < 1:714825/139‑1 (MQ=255) tttCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCa < 2:1095711/139‑1 (MQ=255) ttCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCGGACCCCGTCACAGAAGATGAGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCaa < 1:1209226/139‑1 (MQ=255) ttCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCaa < 2:780637/139‑1 (MQ=255) tCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCaaa < 1:734441/139‑1 (MQ=255) aCAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca < 2:1230170/60‑1 (MQ=255) aCAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca > 1:1230170/1‑60 (MQ=255) aCAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGaagaag < 2:1499715/86‑1 (MQ=255) aCAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGaagaag > 1:1499715/1‑86 (MQ=255) aaaGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca > 1:521016/1‑75 (MQ=255) aaaGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 2:521016/75‑1 (MQ=255) aaaGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCtata > 1:792438/1‑139 (MQ=255) aaGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca > 2:1540073/1‑52 (MQ=255) aaGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAacaaca < 1:1540073/52‑1 (MQ=255) gcgcGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGt > 2:196875/1‑139 (MQ=255) cgcgTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGc < 1:656806/54‑1 (MQ=255) cgcgTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGc > 2:656806/1‑54 (MQ=255) cgcgTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 2:55112/61‑1 (MQ=255) cgcgTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc > 1:55112/1‑61 (MQ=255) gcgTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGTAAAGAACCTTGCAAAAGCCTATAAAGGCCGTcg < 2:284690/139‑1 (MQ=255) gTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTcgcg < 2:1807612/139‑1 (MQ=255) ttCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCaaa > 1:1065976/1‑109 (MQ=255) ttCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCaaa < 2:1065976/109‑1 (MQ=255) ttCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTagaaga > 2:1298850/1‑139 (MQ=255) tCTGGTGCCGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGAc > 2:1072491/1‑139 (MQ=255) ccGTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGcc < 2:792438/139‑1 (MQ=255) gTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca > 1:861733/1‑43 (MQ=255) gTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGca < 2:861733/43‑1 (MQ=255) gTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGc > 1:930081/1‑72 (MQ=255) gTCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGc < 2:930081/72‑1 (MQ=255) tCGCAGCTGCAGGGCAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGa > 2:488173/1‑139 (MQ=255) cGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc > 1:1171016/1‑36 (MQ=255) cGCAGCTGCAGGGCAAAAACAACAAAGGCCAGAccc < 2:1171016/36‑1 (MQ=255) | GCTTATCTGCAGCAGGTCGATAGCAACATTAAGGGCGATAAGATCACTTACCTGGTGAAAGAGCAGAAAATGCAGGCTTTCAGCGACAAAGGCAAGCGCGTAACAACCGTTCTGGTGCCGTCGCAGCTGCAGGACAAAAACAACAAAGGCCAGACCCCGGCACAGAAGAAGGGTAATTAATTCGTTATGGCAACATTAACTGCAAAGAACCTTGCAAAAGCCTATAAAGGCCGTCGCGTGGTAGAAGACGTCAGCCTGA > NC_000913/3343758‑3344016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |