Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F1 I2 R1 772 77.0 3769570 91.6% 3452926 105.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,137,229 A→G S143S (AGT→AGC)  yijF ← DUF1287 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,137,2290AG100.0% 360.8 / NA 101S143S (AGT→AGC) yijFDUF1287 family protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (55/46);  total (55/46)

Only 100 of 101 total aligned reads displayed.

TGCGCGCCTGCGCCAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCACTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACTCAGCAAAATTCT  >  NC_000913/4137101‑4137362
                                                                                                                                  |                                                                                                                                     
tGCGCGCCTGCGCCAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCt                                                                                                                             >  2:125675/1‑139 (MQ=255)
  cgcgcCTGCGCCAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTg                                                                                                                           >  1:1237210/1‑139 (MQ=255)
        tGCGCCAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCtggtg                                                                                                                     >  2:329578/1‑139 (MQ=255)
           gcCAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  2:1237210/139‑1 (MQ=255)
            ccAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGc                                                                                                                 <  1:205284/139‑1 (MQ=255)
            ccAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTGGATAGTCGCTGGGGTTCTTGCTGGTGGGGc                                                                                                                 <  1:329578/139‑1 (MQ=255)
                     tGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  1:800096/129‑1 (MQ=255)
                     tGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  >  2:800096/1‑129 (MQ=255)
                        aTCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCAt                                                                                                     >  1:279107/1‑139 (MQ=255)
                         tCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    >  2:1518503/1‑139 (MQ=255)
                         tCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    <  2:1877847/139‑1 (MQ=255)
                         tCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    >  2:279835/1‑139 (MQ=255)
                          cACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACA‑‑ATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATggcg                                                                                                 >  2:1353801/1‑139 (MQ=255)
                           aCCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTggg                                                                                                                   >  1:98417/1‑122 (MQ=255)
                           aCCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATggc                                                                                                  >  1:607975/1‑139 (MQ=255)
                            ccAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATggcg                                                                                                 >  2:1305691/1‑139 (MQ=255)
                            ccAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTCGGGc                                                                                                                 <  2:1179347/123‑1 (MQ=255)
                            ccAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTCGGGc                                                                                                                 >  1:1179347/1‑123 (MQ=255)
                               gcggcgTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCt                                                                                              >  2:1593468/1‑139 (MQ=255)
                               gcggcgTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCt                                                                                              >  1:1276555/1‑139 (MQ=255)
                                cggcgTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTa                                                                                             >  2:665818/1‑139 (MQ=255)
                                 ggcgTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTaa                                                                                            >  1:116953/1‑139 (MQ=255)
                                   cgTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAGACACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  >  1:1440329/1‑117 (MQ=255)
                                   cgTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAGACACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  2:1440329/117‑1 (MQ=255)
                                     tACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCa                                                                                        <  1:279835/139‑1 (MQ=255)
                                      aCCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAg                                                                                       <  2:116953/139‑1 (MQ=255)
                                            gcgGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAAcc                                                                                         >  1:1778968/1‑131 (MQ=255)
                                            gcgGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAAcc                                                                                         <  2:1778968/131‑1 (MQ=255)
                                                 cGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCt                                                                                                                                     >  2:1220537/1‑82 (MQ=255)
                                                    aGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCa                                                                                        >  1:1566491/1‑124 (MQ=255)
                                                    aGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCa                                                                                        <  2:1566491/124‑1 (MQ=255)
                                                      ccATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACA‑‑ATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCAcc                                                                     <  1:1353801/139‑1 (MQ=255)
                                                                ccaccCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTg                                                             <  1:125675/139‑1 (MQ=255)
                                                                   ccccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATc                                                          >  1:994486/1‑139 (MQ=255)
                                                                   ccccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATc                                                          >  2:1361522/1‑139 (MQ=255)
                                                                    cccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  >  2:528440/1‑82 (MQ=255)
                                                                    cccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  1:528440/82‑1 (MQ=255)
                                                                    cccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAg                                                                               <  2:1684502/117‑1 (MQ=255)
                                                                    cccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAg                                                                               >  1:1684502/1‑117 (MQ=255)
                                                                     ccAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGATGGTGATCGa                                                        <  1:1518503/139‑1 (MQ=255)
                                                                             tgCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGc                                                                                                                 <  1:366587/74‑1 (MQ=255)
                                                                             tgCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGc                                                                                                                 >  2:366587/1‑74 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCt                                                                                                                                     >  2:331684/1‑53 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  >  2:1751339/1‑72 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  1:1751339/72‑1 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCg                                                                                                                <  2:34441/74‑1 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCg                                                                                                                >  1:34441/1‑74 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    <  1:140814/86‑1 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    >  2:140814/1‑86 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCa                                                                                        <  1:1450471/98‑1 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCa                                                                                        >  2:1450471/1‑98 (MQ=255)
                                                                              gCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGt                                               >  2:119180/1‑139 (MQ=255)
                                                                                 aGCCCGTTATCCAGTCGCCAGGGG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGCTCTTGCTGGTGGGGc                                                                                                                 >  2:620235/1‑70 (MQ=255)
                                                                                 aGCCCGTTATCCAGTCGCCAGGAG‑‑ACCATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGc                                                                                                                 <  1:620235/70‑1 (MQ=255)
                                                                                  gCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTg                                                                                                                                    >  2:8863/1‑50 (MQ=255)
                                                                                  gCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTg                                                                                                                                    <  1:8863/50‑1 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  1:366424/67‑1 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  >  2:66296/1‑67 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  >  2:366424/1‑67 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTgggg                                                                                                                  <  1:66296/67‑1 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTg                                                   >  2:901818/1‑130 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCggg                                          >  2:523117/1‑139 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCggg                                          >  1:574815/1‑139 (MQ=255)
                                                                                   cccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGAGGTTg                                                   <  1:901818/130‑1 (MQ=255)
                                                                                    ccGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGgc                                         <  1:1305691/139‑1 (MQ=255)
                                                                                     cGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGgcg                                        >  2:1067633/1‑139 (MQ=255)
                                                                                              gTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCg                                            >  1:92722/1‑126 (MQ=255)
                                                                                              gTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCg                                            <  2:92722/126‑1 (MQ=255)
                                                                                              gTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACtt                               <  1:1067633/139‑1 (MQ=255)
                                                                                                 gCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    >  1:1831572/1‑67 (MQ=255)
                                                                                                 gCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATg                                                                                                    <  2:1831572/67‑1 (MQ=255)
                                                                                                 gCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCa                            >  2:97581/1‑139 (MQ=255)
                                                                                                 gCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCa                            >  1:1161972/1‑139 (MQ=255)
                                                                                                 gCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCCGTCCGGGCGCTTTAACTTCCa                            <  2:279107/139‑1 (MQ=255)
                                                                                                   cAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATTTTGCTGTCCGGGCGCTTTAACTTCCAtt                          <  2:1161972/139‑1 (MQ=255)
                                                                                                   cAGGAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCAtt                          <  1:665818/139‑1 (MQ=255)
                                                                                                     ggAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCAtttt                        <  2:607975/139‑1 (MQ=255)
                                                                                                     ggAG‑‑ACAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCAtttt                        >  2:631416/1‑139 (MQ=255)
                                                                                                           aCAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTg                                                             >  1:399819/1‑98 (MQ=255)
                                                                                                           aCAATATCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTg                                                             <  2:399819/98‑1 (MQ=255)
                                                                                                               tatCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCgg                                           <  1:492405/112‑1 (MQ=255)
                                                                                                               tatCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCgg                                           >  2:492405/1‑112 (MQ=255)
                                                                                                               tatCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCgg                   <  1:1349863/136‑1 (MQ=255)
                                                                                                               tatCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCgg                   >  2:1349863/1‑136 (MQ=255)
                                                                                                                 tCGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACt              <  1:1361522/139‑1 (MQ=255)
                                                                                                                  cGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACt              >  2:1081734/1‑138 (MQ=255)
                                                                                                                  cGCCCGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACt              <  1:1081734/138‑1 (MQ=255)
                                                                                                                    cccGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCAcc                                                                     >  2:1069354/1‑81 (MQ=255)
                                                                                                                    cccGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCAcc                                                                     <  1:1069354/81‑1 (MQ=255)
                                                                                                                    cccGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACTCAg           >  2:1872072/1‑139 (MQ=255)
                                                                                                                    cccGCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACTCAg           >  1:460415/1‑139 (MQ=255)
                                                                                                                       gCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGAc                                                                 <  2:1640297/82‑1 (MQ=255)
                                                                                                                       gCTTGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGAc                                                                 >  1:1640297/1‑82 (MQ=255)
                                                                                                                         ttGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGa                                                                              >  2:584588/1‑67 (MQ=255)
                                                                                                                         ttGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGa                                                                              <  1:584588/67‑1 (MQ=255)
                                                                                                                         ttGATAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACTCAGCaaaa      >  1:306200/1‑139 (MQ=255)
                                                                                                                             tAGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACTCAGCAAAAttct  <  1:523117/139‑1 (MQ=255)
                                                                                                                              aGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTcc                                                                                 >  2:1784354/1‑59 (MQ=255)
                                                                                                                              aGTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTcc                                                                                 <  1:1784354/59‑1 (MQ=255)
                                                                                                                               gTCGCTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCa                                                                       <  2:1531718/68‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                     
TGCGCGCCTGCGCCAATGTTATGTATCACCAGCGGCGTACCGTCGCGGGCGAAGCCATCTGAAACCACCCCAATATGTGCCAGCCCGTTATCCAGTCGCCAGGAG‑‑ACAATATCGCCCGCTTGATAGTCACTGGGGTTCTTGCTGGTGGGGCGTGTTTTATCATGGCGGCTAAACCAGGTTTCCAGATTAGGCACCCGACGGTGATCGATGTTGCTGTCCGGGCGCTTTAACTTCCATTTTTGCGGGTACTCAGCAAAATTCT  >  NC_000913/4137101‑4137362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A