Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F1 I1 R1 776 60.0 3074904 90.1% 2770488 104.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,190,061 (G)6→7 coding (387/672 nt) phoP ← response regulator in two‑component regulatory system with PhoQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,190,0551.G97.1% 229.3 / ‑0.7 68coding (393/672 nt)phoPresponse regulator in two‑component regulatory system with PhoQ
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base G (35/31);  total (36/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01

GAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGAC  >  NC_000913/1189920‑1190186
                                                                                                                                         |                                                                                                                                   
gAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑ggg                                                                                                                                  >  2:1034595/1‑139 (MQ=255)
   cATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑gggggg                                                                                                                               <  1:1035695/139‑1 (MQ=255)
       aaCGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAGAG‑GGGGGGAGc                                                                                                                            >  1:1005242/1‑139 (MQ=255)
             tCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATg                                                                                                                      >  1:153883/1‑139 (MQ=255)
                 tGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCt                                                                                                                  >  2:414476/1‑139 (MQ=255)
                      aCCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGaa                                                                                                             >  2:681584/1‑139 (MQ=255)
                             tGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGAc                                                                                                      <  1:681584/139‑1 (MQ=255)
                                          tATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgccg                                                                                         >  1:1135127/1‑139 (MQ=255)
                                                              tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgccgc                                                                                        <  1:372848/120‑1 (MQ=255)
                                                              tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcgccgc                                                                                        >  2:372848/1‑120 (MQ=255)
                                                              tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                                     >  1:94545/1‑139 (MQ=255)
                                                              tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                                     >  1:1410125/1‑139 (MQ=255)
                                                              tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                                     >  1:1325815/1‑139 (MQ=255)
                                                              tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                                     >  2:636846/1‑139 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGTGAGAGATCAACCTGAA‑ACGGGGGGGTGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                                   >  1:199559/1‑139 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGaa                                                                                                                         <  1:138460/85‑1 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGaa                                                                                                                         >  2:1082933/1‑85 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGaa                                                                                                                         <  1:1082933/85‑1 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGaa                                                                                                                         >  2:138460/1‑85 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                                   <  1:636846/139‑1 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                                   >  2:290892/1‑139 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                                   <  1:414476/139‑1 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑gggg                                                                                                                                 <  2:1018809/76‑1 (MQ=255)
                                                                tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑gggg                                                                                                                                 >  1:1018809/1‑76 (MQ=255)
                                                                  ttCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 >  2:157445/1‑139 (MQ=255)
                                                                  ttCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 >  1:270100/1‑139 (MQ=255)
                                                                     gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAg                                                                                                        <  1:482204/97‑1 (MQ=255)
                                                                     gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAg                                                                                                        >  2:482204/1‑97 (MQ=255)
                                                                     gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                              <  2:153883/139‑1 (MQ=255)
                                                                     gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                              <  2:1135127/139‑1 (MQ=255)
                                                                     gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                              <  2:530619/139‑1 (MQ=255)
                                                                     gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                              >  1:840469/1‑139 (MQ=255)
                                                                      aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 <  1:706238/135‑1 (MQ=255)
                                                                      aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 >  2:706238/1‑135 (MQ=255)
                                                                       aCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACct                                                            >  1:33781/1‑139 (MQ=255)
                                                                        cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 >  1:444325/1‑133 (MQ=255)
                                                                        cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 <  2:444325/133‑1 (MQ=255)
                                                                        cgcgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACctc                                                           >  2:416703/1‑139 (MQ=255)
                                                                          cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGGGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt                                                         <  2:1325815/139‑1 (MQ=255)
                                                                            gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAAGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCa                                                       >  1:874411/1‑139 (MQ=255)
                                                                                    gATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGaaa                                               <  1:290892/139‑1 (MQ=255)
                                                                                     aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑gggg                                                                                                                                 <  2:691355/55‑1 (MQ=255)
                                                                                     aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑gggg                                                                                                                                 >  1:691355/1‑55 (MQ=255)
                                                                                        aCTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt                                          <  1:1152714/139‑1 (MQ=255)
                                                                                         cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt                                          <  1:1034595/139‑1 (MQ=255)
                                                                                          ttCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGc                                                                                <  2:770085/100‑1 (MQ=255)
                                                                                          ttCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGc                                                                                >  1:770085/1‑100 (MQ=255)
                                                                                          ttCGTCATTAATAGATAATTCACGACGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCAGTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGaaa                                               <  1:1261302/133‑1 (MQ=255)
                                                                                          ttCGTCATTAATAGATAATTCACGACGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGACAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGaaa                                               >  2:1261302/1‑133 (MQ=255)
                                                                                           tCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTa                                        >  1:1380149/1‑139 (MQ=255)
                                                                                                 ttAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTcaca                                  <  2:840469/139‑1 (MQ=255)
                                                                                                 ttAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTcaca                                  <  2:270100/139‑1 (MQ=255)
                                                                                                        aTAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcat                           >  2:1468533/1‑139 (MQ=255)
                                                                                                        aTAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcat                           >  2:789399/1‑139 (MQ=255)
                                                                                                         tAATTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcatc                          <  2:874411/139‑1 (MQ=255)
                                                                                                          aaTTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcatc                          >  2:1122252/1‑138 (MQ=255)
                                                                                                          aaTTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcatc                          <  1:1122252/138‑1 (MQ=255)
                                                                                                          aaTTCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAAtcatca                         >  2:840198/1‑139 (MQ=255)
                                                                                                            ttCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACgg                                            <  1:567316/118‑1 (MQ=255)
                                                                                                            ttCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACgg                                            >  2:567316/1‑118 (MQ=255)
                                                                                                            ttCACGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGc                       >  1:126343/1‑139 (MQ=255)
                                                                                                                cGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCg                   <  2:1410125/139‑1 (MQ=255)
                                                                                                                cGGCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCg                   <  1:840198/139‑1 (MQ=255)
                                                                                                                  gCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 <  2:985401/91‑1 (MQ=255)
                                                                                                                  gCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 >  1:985401/1‑91 (MQ=255)
                                                                                                                  gCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 <  2:427266/91‑1 (MQ=255)
                                                                                                                  gCGAGAGAGATCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                                 >  1:427266/1‑91 (MQ=255)
                                                                                                                        gagaTCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTaa           <  1:1450572/139‑1 (MQ=255)
                                                                                                                           aTCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATg                                                                                 <  1:1046499/66‑1 (MQ=255)
                                                                                                                           aTCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATg                                                                                 >  2:1046499/1‑66 (MQ=255)
                                                                                                                           aTCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGaa                                                >  2:77845/1‑99 (MQ=255)
                                                                                                                           aTCAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGaa                                                <  1:77845/99‑1 (MQ=255)
                                                                                                                             cAACCTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACtt      <  1:416703/139‑1 (MQ=255)
                                                                                                                                 cTGAA‑ACGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGAc  <  1:1273170/139‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                   
GAGCATTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAA‑AC‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAATACTTCGAC  >  NC_000913/1189920‑1190186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A