Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F1 I1 R1	759	71.0	3673240	91.5%	3361014	104.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,190,061	(G)_6→7	coding (387/672 nt)	phoP ←	response regulator in two‑component regulatory system with PhoQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,190,055	1	.	G	100.0%	277.8 / NA	77	P131P (CCG→CCC)	phoP	response regulator in two‑component regulatory system with PhoQ
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (43/34); total (43/34)

TTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAA  >  NC_000913/1189925‑1190177

ttAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑ggggggga                                                                                                                    >  2:1385578/1‑137 (MQ=255)

ttAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑ggggggga                                                                                                                    <  2:519497/139‑3 (MQ=255)

        tCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATg                                                                                                             >  1:1061210/1‑139 (MQ=255)

             gCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCtg                                                                                                        >  2:226911/1‑139 (MQ=255)

                   cACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGc                                                                                                  >  2:862353/1‑139 (MQ=255)

                        tGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc                                                                                             >  2:485319/1‑139 (MQ=255)

                                ttGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTa                                                                                     >  1:151695/1‑139 (MQ=255)

                                                    aataGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCAt                                                                 <  1:226911/139‑1 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGAcc                                                                                                          >  2:1486833/1‑93 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGAcc                                                                                                          <  1:1486833/93‑1 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa                                                                           >  2:970796/1‑124 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa                                                                           <  1:970796/124‑1 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                            >  2:507856/1‑139 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                            >  1:1348188/1‑139 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTcgcg                                                            <  1:485319/139‑1 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTc                                                               <  1:1515423/136‑1 (MQ=255)

                                                         tgtATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTc                                                               >  2:1515423/1‑136 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCtg                                                                                                        >  1:1795894/1‑93 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCtg                                                                                                        <  2:1795894/93‑1 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa                                                                                                <  2:649124/101‑1 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa                                                                                                >  1:649124/1‑101 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                          <  1:862353/139‑1 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                          >  1:673072/1‑139 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                          >  2:870645/1‑139 (MQ=255)

                                                           tATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGcc                                                          >  1:312480/1‑139 (MQ=255)

                                                                gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                     >  1:954467/1‑139 (MQ=255)

                                                                gAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                     <  2:312480/139‑1 (MQ=255)

                                                                 aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg                                                                                   >  2:1811414/1‑108 (MQ=255)

                                                                 aaCGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTAcg                                                                                   <  1:1811414/108‑1 (MQ=255)

                                                                     cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa                                                                           <  1:680166/112‑1 (MQ=255)

                                                                     cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa                                                                           >  2:680166/1‑112 (MQ=255)

                                                                     cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt                                                <  2:1061210/139‑1 (MQ=255)

                                                                     cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑g                                                                                                                           <  2:887230/63‑1 (MQ=255)

                                                                     cgGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑g                                                                                                                           >  1:887230/1‑63 (MQ=255)

                                                                       gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACGGGGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTc                                               >  1:1681624/1‑139 (MQ=255)

                                                                       gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa                                                                           >  1:1289956/1‑110 (MQ=255)

                                                                       gTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTa                                                                           <  2:1289956/110‑1 (MQ=255)

                                                                                aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATg                                                                                                             >  2:15596/1‑67 (MQ=255)

                                                                                aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATg                                                                                                             <  1:15596/67‑1 (MQ=255)

                                                                                aTCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAAc                                     <  2:673072/139‑1 (MQ=255)

                                                                                    cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAg                                                                                               >  2:897828/1‑77 (MQ=255)

                                                                                    cTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAg                                                                                               <  1:897828/77‑1 (MQ=255)

                                                                                               aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa                                                                                                >  2:1468578/1‑65 (MQ=255)

                                                                                               aTAGATAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa                                                                                                <  1:1468578/65‑1 (MQ=255)

                                                                                                   aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                        <  2:1520060/101‑1 (MQ=255)

                                                                                                   aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                        >  1:1520060/1‑101 (MQ=255)

                                                                                                   aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcat                  >  1:476839/1‑139 (MQ=255)

                                                                                                   aTAATTCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAatcat                  >  2:652493/1‑139 (MQ=255)

                                                                                                       ttCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGAGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGc              >  2:1478762/1‑139 (MQ=255)

                                                                                                        tCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAg                                                                                                   <  2:1282647/53‑1 (MQ=255)

                                                                                                        tCACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAg                                                                                                   >  1:1282647/1‑53 (MQ=255)

                                                                                                         cACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc            <  1:652493/139‑1 (MQ=255)

                                                                                                         cACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc            >  1:642634/1‑139 (MQ=255)

                                                                                                         cACGGCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCAc            <  2:954467/139‑1 (MQ=255)

                                                                                                            ggCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGGATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCgg         >  1:1694696/1‑139 (MQ=255)

                                                                                                            ggCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt                                                <  1:154291/100‑1 (MQ=255)

                                                                                                            ggCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCtt                                                >  2:154291/1‑100 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa                                                                                                <  2:1314734/51‑1 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCa                                                                                                >  1:1314734/1‑51 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                     <  1:1031923/94‑1 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                     >  2:1031923/1‑94 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGGACCGGc        <  1:1343468/139‑1 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGc        >  1:645102/1‑139 (MQ=255)

                                                                                                             gCGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGc        >  1:1475890/1‑139 (MQ=255)

                                                                                                              cGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATa                       <  2:1561216/123‑1 (MQ=255)

                                                                                                              cGAGAGAGATCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATa                       >  1:1561216/1‑123 (MQ=255)

                                                                                                                   gagaTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTaa  <  1:507856/139‑1 (MQ=255)

                                                                                                                      aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                        <  1:1214241/82‑1 (MQ=255)

                                                                                                                      aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCAt                                                        >  2:1214241/1‑82 (MQ=255)

                                                                                                                      aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt                                 <  1:1703707/105‑1 (MQ=255)

                                                                                                                      aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt                                 >  2:1703707/1‑105 (MQ=255)

                                                                                                                      aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTACATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTc                            >  1:691548/1‑110 (MQ=255)

                                                                                                                      aTCAACCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTACATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTc                            <  2:691548/110‑1 (MQ=255)

                                                                                                                         aaCCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                     >  1:1521630/1‑82 (MQ=255)

                                                                                                                         aaCCTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCAc                                                     <  2:1521630/82‑1 (MQ=255)

                                                                                                                           ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc                                                                                             >  2:818532/1‑40 (MQ=255)

                                                                                                                           ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc                                                                                             <  1:818532/40‑1 (MQ=255)

                                                                                                                           ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt                                 >  2:267090/1‑100 (MQ=255)

                                                                                                                           ccTGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGtt                                 <  1:267090/100‑1 (MQ=255)

                                                                                                                             tGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc                                                                                             <  2:1002430/38‑1 (MQ=255)

                                                                                                                             tGAAACG‑GGGGGGAGCGAAATGACCTGTGAAGCCAGAc                                                                                             >  1:1002430/1‑38 (MQ=255)

TTAACGAATCTTTGCTGACCACTTTGCCATTATTGCGTATCAACGTTTCCATAATAGTGTATTCGAACGCGGTCAGTTTGATCACTTCGTCATTAATAGATAATTCACGGCGAGAGAGATCAACCTGAAAC‑‑GGGGGGAGCGAAATGACCTGTGAAGCCAGACCGCTATTACGCCGCATTAATGCCTGCATTCGCGCCATCACCTCTTCAATATGAAACGGTTTAGTCACATAATCATCAGCACCGGCACTTAA  >  NC_000913/1189925‑1190177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A