Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
776 |
60.0 |
3074904 |
90.1% |
2770488 |
104.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,085,994 |
(GT)5→4 |
intergenic (‑172/‑21) |
fdoG ← / → fdhD |
formate dehydrogenase‑O, large subunit/formate dehydrogenase formation protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,085,986 | 0 | G | . | 100.0%
| 114.7
/ NA
| 28 | intergenic (‑164/‑30) | fdoG/fdhD | formate dehydrogenase‑O, large subunit/formate dehydrogenase formation protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (14/14); total (14/14) |
| * | NC_000913 | 4,085,987 | 0 | T | . | 100.0%
| 114.7
/ NA
| 28 | intergenic (‑165/‑29) | fdoG/fdhD | formate dehydrogenase‑O, large subunit/formate dehydrogenase formation protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (14/14); total (14/14) |
ACGTCCCATTTACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGGTGTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTATGGCGGCGTGATGATTTAC > NC_000913/4085849‑4086103
||
aCGTCCCATTTACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgt < 1:1335485/139‑1 (MQ=255)
gTCCCATTTACGTTCGCTTGCTGCGTGTGCAGGTAGTGTGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgt < 2:588599/139‑1 (MQ=255)
gTCCCATTTACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgt < 2:1045908/139‑1 (MQ=255)
tttACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttc > 2:171290/1‑137 (MQ=255)
tttACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgt < 2:869722/133‑1 (MQ=255)
tttACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgt > 1:869722/1‑133 (MQ=255)
tCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGTCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgt < 2:526030/126‑1 (MQ=255)
tCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGTCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgt > 1:526030/1‑126 (MQ=255)
cGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat < 1:245749/126‑7 (MQ=255)
cGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat > 2:245749/1‑120 (MQ=255)
gtgggagtTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAac < 1:171290/139‑1 (MQ=255)
tgggagtTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGt > 1:1503947/1‑129 (MQ=255)
tgggagtTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGt < 2:1503947/129‑1 (MQ=255)
ggagtTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAAcaca < 2:1224909/139‑1 (MQ=255)
tttCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGa > 2:79941/1‑139 (MQ=255)
gCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACa < 1:79941/139‑1 (MQ=255)
cGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat > 1:679185/1‑78 (MQ=255)
cGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat < 2:679185/84‑7 (MQ=255)
gTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat < 1:783730/77‑7 (MQ=255)
gTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat > 2:783730/1‑71 (MQ=255)
ggCTTAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat < 1:911228/67‑7 (MQ=255)
ggCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGgtgtgtgttcttat > 2:911228/1‑61 (MQ=255)
ggCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACa < 2:136179/120‑1 (MQ=255)
ggCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACa > 1:136179/1‑120 (MQ=255)
ggCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAata < 2:260191/124‑1 (MQ=255)
ggCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAata > 1:260191/1‑124 (MQ=255)
ggCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTc > 2:324060/1‑139 (MQ=255)
gCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAAtgtg > 2:1241618/1‑116 (MQ=255)
gCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAAtgtg < 1:1241618/116‑1 (MQ=255)
catccaGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGt > 2:522725/1‑123 (MQ=255)
catccaGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGt < 1:522725/123‑1 (MQ=255)
tccaGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTa < 1:692351/133‑1 (MQ=255)
tccaGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTa > 2:692351/1‑133 (MQ=255)
tccaGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTATg < 2:1397039/135‑1 (MQ=255)
tccaGGAAGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTATg > 1:1397039/1‑135 (MQ=255)
aGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATca < 2:176661/103‑1 (MQ=255)
aGGGTTTGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATca > 1:176661/1‑103 (MQ=255)
tGTAACAGAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTATGGCGGCGTGATGATTTac > 2:210104/1‑139 (MQ=255)
gAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATcac > 2:1317627/1‑91 (MQ=255)
gAATACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATcac < 1:1317627/91‑1 (MQ=255)
aaTACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTc < 2:536465/101‑1 (MQ=255)
aaTACCATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTc > 1:536465/1‑101 (MQ=255)
cATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAg < 2:466669/104‑1 (MQ=255)
cATAATGTTG‑‑GTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAg > 1:466669/1‑104 (MQ=255)
||
ACGTCCCATTTACATTCGCTTGCTGCGTGTGCAGGGAGTGGGAGTTATTTTTCTTTGCGGAAGGGGCCGCAAAGGTCCAGAATTGGCTCAATTTCCCTCCATCCAGGAAGGGTTTGTAACAGAATACCATAATGTTGGTGTGTGTGTTCTTATCTGGTTAAGAGAAAGTGAAAAAAACACAGCGAAAAGAAATCGAAAATGTGACAAATATCACAGGTGTTCGTCAAATTGAGTTATGGCGGCGTGATGATTTAC > NC_000913/4085849‑4086103
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
