Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I1 R1
|
760 |
58.2 |
3022526 |
90.8% |
2744453 |
102.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,696,452 |
(A)5→4 |
intergenic (‑381/+10) |
uidA ← / ← uidR |
beta‑D‑glucuronidase/transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,696,448 | 0 | A | . | 100.0%
| 187.9
/ NA
| 46 | intergenic (‑377/+14) | uidA/uidR | beta‑D‑glucuronidase/transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (23/23); total (23/23) |
TTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTAA > NC_000913/1696314‑1696581
|
ttGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaag > 2:467842/1‑138 (MQ=255)
tGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaaga > 1:1498553/1‑137 (MQ=255)
ggAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaagaga < 1:569758/139‑5 (MQ=255)
aaCGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaagaga < 2:367616/137‑5 (MQ=255)
aaCGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaagaga > 1:367616/1‑133 (MQ=255)
tAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATc > 2:1013847/1‑139 (MQ=255)
tctcATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGAt < 2:1498553/139‑1 (MQ=255)
gCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATAcc > 1:598253/1‑139 (MQ=255)
aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGc < 2:446866/118‑1 (MQ=255)
aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGc > 1:446866/1‑118 (MQ=255)
aaTATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAatcat > 1:1170473/1‑139 (MQ=255)
tatTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaagaga > 1:739191/1‑98 (MQ=255)
tatTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGaaaagaga < 2:739191/102‑5 (MQ=255)
ttttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATcgcg < 2:1170473/139‑1 (MQ=255)
ttGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATcgcgcg > 1:669215/1‑139 (MQ=255)
ggggggAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTa > 2:1403897/1‑139 (MQ=255)
ggggAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAAt > 2:647463/1‑139 (MQ=255)
ctcCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATa < 2:1037032/110‑1 (MQ=255)
ctcCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGAATGCGGTTAAGATa > 1:1037032/1‑110 (MQ=255)
gAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAac < 2:598253/139‑1 (MQ=255)
aGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATa < 1:358438/104‑1 (MQ=255)
aGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATa > 2:358438/1‑104 (MQ=255)
aGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAacga > 1:24577/1‑139 (MQ=255)
aaGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCa < 1:1403897/139‑1 (MQ=255)
gCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAAt < 1:526448/105‑1 (MQ=255)
gCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAAt > 2:526448/1‑105 (MQ=255)
cacaGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTc < 1:1013847/139‑1 (MQ=255)
gagaAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTc < 2:184394/135‑1 (MQ=255)
gagaAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTc > 1:184394/1‑135 (MQ=255)
agaAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCtt < 1:647463/139‑1 (MQ=255)
ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:24577/139‑1 (MQ=255)
ttACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGata < 2:669215/139‑1 (MQ=255)
gATATGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCgg < 1:467842/139‑1 (MQ=255)
atatGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:748392/139‑1 (MQ=255)
tGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc > 1:129595/1‑133 (MQ=255)
tGAAACGCGGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc < 2:129595/133‑1 (MQ=255)
cgcgGGCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTacac > 2:470380/1‑139 (MQ=255)
gggCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAacga < 2:242337/92‑1 (MQ=255)
gggCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAacga > 1:242337/1‑92 (MQ=255)
gggCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa > 2:1141184/1‑133 (MQ=255)
gggCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 1:1141184/133‑1 (MQ=255)
gggCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGt > 1:407477/1‑139 (MQ=255)
gCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 2:804780/126‑1 (MQ=255)
gCACAGTTATCACCAGCCCGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 1:804780/1‑126 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAatcat < 1:657256/50‑1 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAatcat > 2:657256/1‑50 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc < 2:1324389/107‑1 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATc > 1:1324389/1‑107 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc > 2:1368180/1‑110 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGc < 1:1368180/110‑1 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa < 2:1159111/115‑1 (MQ=255)
cccGCCG‑AAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTa > 1:1159111/1‑115 (MQ=255)
cgccg‑AAAAGAGAGAGGAATCAGGATGCGGTTAAGATACCGCGAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTaa > 1:151716/1‑139 (MQ=255)
|
TTGGGAACGATAAACTCTCATGACATATGGCTACAGTGAATATTTTGGGGGGAATTCTCCGAAGCCGGGAAGGATAATTTTTGCACAGAGAAATTACGATATGAAACGCGGGCACAGTTATCACCAGCCCGCCGAAAAAGAGAGA‑GAATCAGGATGCGGTTAAGATACCGCCAATCATCGCGCGTAATCCCTGAGCAAACGACGCTTCACGCGCCAGGTCTTCCGCTTCGATATCGGCCAGTACACCGTAGGTCAGATCCAGCAGTAA > NC_000913/1696314‑1696581
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
