Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate | Predicted Mutations | Mean Coverage | Total Reads | Percent Mapped | Mapped Reads | Average Read Length |
|---|---|---|---|---|---|---|
| A6 F1 I2 R1 | 758 | 59.3 | 2864096 | 93.9% | 2689386 | 105.7 |
Breseq alignment
| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,072,980 | T→C | L481P (CTG→CCG) | flu → | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,072,980 | 0 | T | C | 100.0% | 404.8 / NA | 110 | L481P (CTG→CCG) | flu | CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/56); total (54/56) | |||||||||||
Only 100 of 110 total aligned reads displayed.
TGGCGGACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAG > NC_000913/2072849‑2073109 | tGGCGGACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGa < 2:1214283/139‑1 (MQ=255) cGGACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGc < 1:1173088/139‑1 (MQ=255) gACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGctc > 1:241966/1‑139 (MQ=255) cTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGctctc < 2:241966/139‑1 (MQ=255) ttCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa < 2:443266/139‑1 (MQ=255) ttCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa < 2:1224823/139‑1 (MQ=255) ttCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa > 1:491332/1‑139 (MQ=255) ttCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGCCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGc < 2:868093/132‑1 (MQ=255) ttCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGCCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGc > 1:868093/1‑132 (MQ=255) cACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCAcc > 1:998506/1‑139 (MQ=255) ggggCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAgg > 2:71830/1‑121 (MQ=255) ggggCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAgg < 1:71830/121‑1 (MQ=255) ggggCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACgg > 1:1146513/1‑139 (MQ=255) ggggCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACgg > 2:1186670/1‑139 (MQ=255) ggggCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGGGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACgg > 1:308194/1‑139 (MQ=255) acTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGaa < 2:1425596/139‑1 (MQ=255) tGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACACTGACCATACGTGAAGGCGATGCACTCCCGCAGGGAGGct > 2:873413/1‑111 (MQ=255) ggCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGaaaaa > 1:750502/1‑139 (MQ=255) ggCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGaaaaa > 2:607610/1‑139 (MQ=255) ggCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGa < 2:404284/102‑1 (MQ=255) ggCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGa > 1:404284/1‑102 (MQ=255) accaccacGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGaa < 1:1186670/139‑1 (MQ=255) caccacGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGctct < 2:362487/103‑1 (MQ=255) caccacGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGctct > 1:362487/1‑103 (MQ=255) caccacGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACg > 1:1010427/1‑116 (MQ=255) caccacGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGt > 1:789200/1‑139 (MQ=255) caccacGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCATGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACg < 2:1010427/116‑1 (MQ=255) gCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCAGCCGTGAAGGCGATGCACTCCCGCAGGCAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATGAGGAAGTGGcacc < 2:644792/139‑2 (MQ=255) aaTAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCAcactca < 2:491332/139‑1 (MQ=255) cGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTc < 2:965429/139‑1 (MQ=255) gcgcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAg > 2:939239/1‑139 (MQ=255) cgcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGctct > 2:86425/1‑85 (MQ=255) cgcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGctct < 1:86425/85‑1 (MQ=255) cgcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa > 1:904122/1‑89 (MQ=255) cgcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa < 2:904122/89‑1 (MQ=255) cgcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCACTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGc > 2:46124/1‑139 (MQ=255) gcCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCa < 2:1146513/139‑1 (MQ=255) ccATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCaa > 1:564320/1‑139 (MQ=255) ccATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCaa > 1:624162/1‑139 (MQ=255) ccTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTc < 2:382923/139‑1 (MQ=255) ttCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAggg < 1:926810/63‑1 (MQ=255) ttCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCAcc > 2:234098/1‑139 (MQ=255) ttCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCAcc > 1:510818/1‑139 (MQ=255) ttCCGGGAAGACGGTGAACAACGATACCATGACCATCCGTGAAGGCGATACACTCCCGCAggg > 2:926810/1‑63 (MQ=255) ttCCGGGAAGACGGAGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCAcc > 2:807158/1‑139 (MQ=255) tCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGaa > 1:397811/1‑103 (MQ=255) tCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGt < 2:1325284/105‑1 (MQ=255) tCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGt > 1:1325284/1‑105 (MQ=255) tCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCAccc > 2:1358967/1‑139 (MQ=255) tCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCAccc > 2:398576/1‑139 (MQ=255) ccGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCAcactcact < 2:549365/116‑1 (MQ=255) ccGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCAcactcact > 1:549365/1‑116 (MQ=255) ggAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGaa < 1:1300945/139‑1 (MQ=255) ggAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGaa > 2:1300945/1‑139 (MQ=255) aCGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCg < 2:177266/139‑1 (MQ=255) cGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAgg > 1:1413337/1‑91 (MQ=255) cGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGt < 2:750502/139‑1 (MQ=255) cGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGt < 1:939239/139‑1 (MQ=255) cGGTGAACAACGATACCCTGACCATCAGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAATGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGt > 2:604521/1‑139 (MQ=255) ggagAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTc < 1:807158/136‑1 (MQ=255) aacaacGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa < 2:1352302/58‑1 (MQ=255) aacaacGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCa > 1:1352302/1‑58 (MQ=255) acaacGATACCCTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCt < 2:510818/139‑1 (MQ=255) aacGATACCCTGACCATCGGTGAAGGCGATGCACTCCCGCAGGGAg > 2:728826/1‑46 (MQ=38) aacGATACCCTGACCATCGGTGAAGGCGATGCACTCCCGCAGGGAg < 1:728826/46‑1 (MQ=38) cccTGACCATCCGTGAATGCGATGCATTCCCGCAGGTAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAgg < 2:308194/139‑1 (MQ=255) cccTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACgg > 1:457192/1‑58 (MQ=255) cccTGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACgg < 2:457192/58‑1 (MQ=255) tGACCATCCGTGAAGGCGATGCACTCCCGCAGGGCGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAacac < 2:976562/100‑1 (MQ=255) tGACCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAacac > 1:976562/1‑100 (MQ=255) aCCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGct < 1:624377/37‑1 (MQ=255) aCCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGct > 2:624377/1‑37 (MQ=255) aCCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGaa < 2:398790/73‑1 (MQ=255) aCCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGaa > 1:398790/1‑73 (MQ=255) aCCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgc > 1:1227689/1‑139 (MQ=255) aCCATCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgc > 1:87771/1‑139 (MQ=255) aTCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctga < 2:1397608/139‑1 (MQ=255) tCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCa < 2:374461/65‑1 (MQ=255) tCCGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCa > 1:374461/1‑65 (MQ=255) ccGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGt > 2:29518/1‑114 (MQ=255) ccGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGt < 1:29518/114‑1 (MQ=255) ccGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctgacg > 1:29456/1‑139 (MQ=255) ccGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctgacg < 1:46124/139‑1 (MQ=255) cGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTc < 1:1196390/114‑1 (MQ=255) cGTGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTc > 2:1196390/1‑114 (MQ=255) tGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctgacgctg < 2:671440/139‑1 (MQ=255) tGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctgacgctg < 2:900479/139‑1 (MQ=255) tGAAGGCGATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctgacgctg < 1:234098/139‑1 (MQ=255) gATGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGaa < 2:572656/58‑1 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGa > 1:1222721/1‑46 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGa < 2:1222721/46‑1 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACATTCACTGTCAGCAAcacca < 1:943814/84‑1 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTc > 1:552956/1‑89 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctga < 1:218125/126‑1 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCacgctga > 2:218125/1‑126 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAg > 2:1070327/1‑139 (MQ=255) aTGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGCAAGTGGCACACTCACTGTCAGCAAcacca > 2:943814/1‑84 (MQ=255) tGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTgg < 1:480731/60‑1 (MQ=255) tGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTgg > 2:480731/1‑60 (MQ=255) tGCACTCCCGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACcaca < 1:827622/85‑1 (MQ=255) | TGGCGGACTGTTCACCGCCAGGGGCGGCACACTGGCGGGCACCACCACGCTGAATAACGGCGCCATACTTACCCTTTCCGGGAAGACGGTGAACAACGATACCCTGACCATCCGTGAAGGCGATGCACTCCTGCAGGGAGGCTCTCTCACCGGTAACGGCAGCGTGGAAAAATCAGGAAGTGGCACACTCACTGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAG > NC_000913/2072849‑2073109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |