Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F1 I2 R1 758 59.3 2864096 93.9% 2689386 105.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,172 T→C V545A (GTG→GCG)  flu → CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,1720TC100.0% 497.5 / NA 135V545A (GTG→GCG) fluCP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (69/66);  total (69/66)

Only 100 of 135 total aligned reads displayed.

TGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCC  >  NC_000913/2073041‑2073306
                                                                                                                                   |                                                                                                                                      
  tCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACgg                                                                                                                               <  1:55629/139‑1 (MQ=255)
  tCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACgg                                                                                                                               <  2:1383371/139‑1 (MQ=255)
        acacCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCAt                                                                                                                         >  2:1104203/1‑139 (MQ=255)
            cacaCTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAc                                                                                                                     >  1:692758/1‑139 (MQ=255)
              cacTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAccc                                                                                                                   >  1:1288421/1‑139 (MQ=255)
               acTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAcccc                                                                                                                  <  2:29456/139‑1 (MQ=255)
                   aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGa                                                                                                              >  2:598222/1‑139 (MQ=255)
                   aCCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGa                                                                                                              >  2:1163349/1‑139 (MQ=255)
                       aGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGt                                                                                                          <  2:1288421/139‑1 (MQ=255)
                         aaaGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAcc                                                                                                                    <  1:513029/127‑1 (MQ=255)
                         aaaGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAcc                                                                                                                    >  2:513029/1‑127 (MQ=255)
                           aGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAcccc                                                                                                                  >  1:959562/1‑127 (MQ=255)
                             ccGGCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCActct                                                                                                    >  1:776586/1‑139 (MQ=255)
                               gTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCg                                                                                                  >  1:90860/1‑139 (MQ=255)
                                   aCCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc                                                                                              >  1:628196/1‑139 (MQ=255)
                                       gaatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                          <  2:1227689/139‑1 (MQ=255)
                                       gaatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                          <  1:1104203/139‑1 (MQ=255)
                                       gaatgaaGGCACGCTGACGCTGAACGACAGAACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                          >  1:335672/1‑139 (MQ=255)
                                        aatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         >  2:15888/1‑139 (MQ=255)
                                        aatgaaGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         <  2:1015268/139‑1 (MQ=255)
                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCAtt                                                                                                                        <  1:680635/102‑1 (MQ=255)
                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                                                   >  2:592588/1‑139 (MQ=255)
                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                                                   >  1:356181/1‑139 (MQ=255)
                                              ggCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                                                   >  1:1228291/1‑139 (MQ=255)
                                              ggCACGCTGACGCTGAACGACAGTACCATCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                                                   >  2:727794/1‑139 (MQ=255)
                                              ggCACGCTGACGCTGAACGACAGAACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCt                                                                                   <  2:335672/139‑1 (MQ=255)
                                               gCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTGAGCGCGGTACAGCCCAGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTg                                                                                  >  1:910322/1‑139 (MQ=255)
                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTTATTGCGCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTCACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                                               >  1:956843/1‑139 (MQ=255)
                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                                               >  1:8217/1‑139 (MQ=255)
                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                                               >  1:444781/1‑139 (MQ=255)
                                                  cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGaa                                                                               >  1:905501/1‑139 (MQ=255)
                                                    ctgacgctgaACGACAGTACCGTCACCACGGAAGTCATTGCGCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAata                                                                             >  2:225079/1‑139 (MQ=255)
                                                       acgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         <  2:715876/124‑1 (MQ=255)
                                                       acgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         >  1:715876/1‑124 (MQ=255)
                                                        cgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         >  1:18352/1‑123 (MQ=255)
                                                               cGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATaa                                                                   <  2:163546/138‑1 (MQ=255)
                                                                  cAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGcc                                                               >  1:1076279/1‑139 (MQ=255)
                                                                   aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGcc                                                                                       <  1:133669/114‑1 (MQ=255)
                                                                   aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGcc                                                                                       >  2:133669/1‑114 (MQ=255)
                                                                   aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                                              >  2:899445/1‑139 (MQ=255)
                                                                   aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                                              <  1:15888/139‑1 (MQ=255)
                                                                   aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                                              <  1:592588/139‑1 (MQ=255)
                                                                       ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAc                                                                                                                     <  1:251401/80‑1 (MQ=255)
                                                                       ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAc                                                                                                                     >  2:251401/1‑80 (MQ=255)
                                                                       ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGt                                                          >  2:457737/1‑139 (MQ=255)
                                                                       ccGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGt                                                          >  2:1304965/1‑139 (MQ=255)
                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAcccc                                                                                                                  <  1:189512/78‑1 (MQ=255)
                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGAcccc                                                                                                                  >  2:189512/1‑78 (MQ=255)
                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         >  1:823603/1‑103 (MQ=255)
                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         <  2:823603/103‑1 (MQ=255)
                                                                            accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                     >  2:800740/1‑139 (MQ=255)
                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCgg                                                  >  2:584242/1‑139 (MQ=255)
                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCgg                                                  >  2:519468/1‑139 (MQ=255)
                                                                               acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCgg                                                  <  2:1228291/139‑1 (MQ=255)
                                                                                 ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCa                                                                                      >  1:301985/1‑101 (MQ=255)
                                                                                 ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                                              >  1:786732/1‑125 (MQ=255)
                                                                                 ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCa                                                              <  2:786732/125‑1 (MQ=255)
                                                                                 ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCggtg                                                <  2:675578/139‑1 (MQ=255)
                                                                                   aTGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc                                                                                              >  1:150552/1‑91 (MQ=255)
                                                                                   aTGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTc                                                                                              <  2:150552/91‑1 (MQ=255)
                                                                                      tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                           <  2:927562/139‑1 (MQ=255)
                                                                                      tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                           <  1:519468/139‑1 (MQ=255)
                                                                                      tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGa                                           <  2:355949/139‑1 (MQ=255)
                                                                                        aTTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGt                                                                                          >  1:591227/1‑90 (MQ=255)
                                                                                              cAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCC‑CCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAg                                  <  1:604521/139‑1 (MQ=255)
                                                                                               aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                     <  1:1010513/120‑1 (MQ=255)
                                                                                               aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCggt                                                 >  1:132190/1‑124 (MQ=255)
                                                                                               aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAg                                  <  2:90860/139‑1 (MQ=255)
                                                                                               aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACCGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                     >  2:1010513/1‑120 (MQ=255)
                                                                                                 cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGcc                                                                                       >  1:835632/1‑84 (MQ=255)
                                                                                                 cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGcc                                                                                       <  2:835632/84‑1 (MQ=255)
                                                                                                 cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGcc                                >  1:267709/1‑139 (MQ=255)
                                                                                                  gcgGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         <  1:386980/81‑1 (MQ=255)
                                                                                                  gcgGTACAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         >  2:386980/1‑81 (MQ=255)
                                                                                                        cAGCCCTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCgg                         <  2:1243979/139‑1 (MQ=255)
                                                                                                           cccTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCt                                                                                               >  2:1132468/1‑66 (MQ=255)
                                                                                                           cccTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCt                                                                                               <  1:1132468/66‑1 (MQ=255)
                                                                                                           cccTGAAGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACa                      >  1:1403986/1‑139 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGTTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                <  2:1032403/76‑1 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCAc                                                                                                                <  1:260118/44‑1 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCAc                                                                                                                >  2:260118/1‑44 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         >  1:965647/1‑67 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTg                                                                                         <  2:965647/67‑1 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                >  1:1032403/1‑76 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                >  2:1402377/1‑76 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATcc                                                                          <  1:120959/82‑1 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                     <  2:691583/103‑1 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGt                                                     >  1:691583/1‑103 (MQ=255)
                                                                                                                aaGCTGACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTc                 >  2:573364/1‑139 (MQ=255)
                                                                                                                     gACCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCt                                     >  2:684216/1‑114 (MQ=255)
                                                                                                                      aCCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                >  2:355237/1‑70 (MQ=255)
                                                                                                                      aCCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGa                                                                                <  1:355237/70‑1 (MQ=255)
                                                                                                                      aCCGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCa           >  1:1229522/1‑139 (MQ=255)
                                                                                                                        cGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc         <  1:584242/139‑1 (MQ=255)
                                                                                                                        cGGCAGCACTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc         <  2:982386/139‑1 (MQ=255)
                                                                                                                           cagcaCTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTcc      >  2:275481/1‑139 (MQ=255)
                                                                                                                            agcaCTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGGCAGATTCATTTCACCTCCa     <  2:776586/139‑1 (MQ=255)
                                                                                                                             gcaCTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc    <  2:564010/139‑1 (MQ=255)
                                                                                                                             gcaCTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc    <  2:444781/139‑1 (MQ=255)
                                                                                                                                cTGCGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAccc  <  1:1052767/138‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                      
TGTCAGCAACACCACACTCACCCAGAAAGCCGTCAACCTGAATGAAGGCACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCC  >  NC_000913/2073041‑2073306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A