Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
748 |
32.0 |
1685426 |
92.6% |
1560704 |
103.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,567,249 |
C→T |
intergenic (‑3/+38) |
yjiN ← / ← mdtM |
zinc‑type alcohol dehydrogenase‑like protein/multidrug efflux system protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,567,249 | 0 | C | T | 100.0%
| 35.0
/ NA
| 13 | intergenic (‑3/+38) | yjiN/mdtM | zinc‑type alcohol dehydrogenase‑like protein/multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (6/7); total (6/7) |
AGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACG > NC_000913/4567115‑4567368
|
aGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTa > 2:30764/1‑139 (MQ=255)
cGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATa < 2:741939/139‑1 (MQ=255)
cTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGcc > 2:194125/1‑139 (MQ=255)
ggcAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCAc < 1:194125/139‑1 (MQ=255)
cAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCgg < 2:562162/139‑1 (MQ=255)
agagagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGtt < 1:232201/54‑1 (MQ=255)
agagagCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGtt > 2:232201/1‑54 (MQ=255)
agCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAAt > 1:621027/1‑139 (MQ=255)
gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt > 1:704767/1‑62 (MQ=255)
gcgcCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCt < 2:704767/62‑1 (MQ=255)
gcgcGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCgg > 1:357308/1‑92 (MQ=255)
gcgcGTCTGAGTTCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCgg < 2:357308/92‑1 (MQ=255)
tCGATGAGTTTATTCATAATGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAAcg < 1:30764/139‑1 (MQ=255)
|
AGCAATCGCCTTCACGCCGCTCACCCAAAAATTGGGCGGCAAAAACAGCGTAACGACAAAGGTAGCAGCGGCGATAAGCAGTAAAGAGAGCGCCAACCTTTTGGCGCGTCTGAGTTCGATGAGTTTATTCATAACGTTAAGAATAGAGCCTGACGGCCGGATCGCGCAAAAATCACTGCTCCTCCACTAGCTCGGCTGCCTGATGCTGGCGCACGCGATTGAGCAATCCCGCCAGGGTGAAAACGACGATAACG > NC_000913/4567115‑4567368
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
