Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
765 |
46.1 |
2269152 |
93.8% |
2128464 |
105.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,263,255 |
A→G |
R82R (CGT→CGC) |
lolB ← |
lipoprotein localization factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,263,255 | 0 | A | G | 100.0%
| 110.8
/ NA
| 32 | R82R (CGT→CGC) | lolB | lipoprotein localization factor |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (16/16); total (16/16) |
GGTCAATTTGCCAATCATCTCTTCGGCGTCATCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGAT > NC_000913/1263123‑1263376
|
ggTCAATTTGCCAATCATCTCTTCGGCGTCATCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAg > 2:1025266/1‑139 (MQ=255)
ggTCAATTTGCCAATCATCTCTTCGGCGTCATCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAg > 1:463981/1‑139 (MQ=255)
cATCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTtgctg < 2:1021730/130‑1 (MQ=255)
cATCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTtgctg > 1:1021730/1‑130 (MQ=255)
aTCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg < 2:463981/139‑1 (MQ=255)
gTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGt < 1:1020067/139‑1 (MQ=255)
cTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACtttt > 1:1023091/1‑139 (MQ=255)
tATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAg < 1:57912/86‑1 (MQ=255)
tATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAg > 2:57912/1‑86 (MQ=255)
gACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTttg > 1:1004334/1‑126 (MQ=255)
gACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTttg < 2:1004334/126‑1 (MQ=255)
cccGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGcgccgc < 1:1021003/139‑1 (MQ=255)
cGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGa < 1:1025266/139‑1 (MQ=255)
aGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGa < 1:249830/139‑1 (MQ=255)
aGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGa > 2:249830/1‑139 (MQ=255)
aGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGa < 2:1023091/139‑1 (MQ=255)
cATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGaa < 1:79445/121‑1 (MQ=255)
cATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGaa > 2:79445/1‑121 (MQ=255)
cATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAG‑AGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCCCCGCGAGTCTGATAc > 2:518665/1‑139 (MQ=255)
aGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTc < 1:100523/129‑1 (MQ=255)
aGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTc > 2:100523/1‑129 (MQ=255)
gTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAg > 1:889253/1‑36 (MQ=255)
gTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAg < 2:889253/36‑1 (MQ=255)
gTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg > 2:1079558/1‑66 (MQ=255)
gTGCTGCCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAg < 1:1079558/66‑1 (MQ=255)
tgctgcCCAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCAc > 2:366047/1‑139 (MQ=255)
cccAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGt < 1:943333/82‑1 (MQ=255)
cccAATGGGTTAGTGAGCAGCAGGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGt > 2:943333/1‑82 (MQ=255)
cagcagGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTtgctgat < 2:344119/128‑1 (MQ=255)
cagcagGCGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTtgctgat > 1:344119/1‑128 (MQ=255)
gcagGCGGTAGCGATCCTGGCCGGGTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGACATATAAGCg < 1:767344/77‑1 (MQ=255)
gcagGCGGTAGCGATCCTGGCCGGATTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCg > 2:767344/1‑77 (MQ=255)
|
GGTCAATTTGCCAATCATCTCTTCGGCGTCATCGGCGGTATAACGCTGACCTTTATTGTCGACTAACTGCACGTTACCCGGTTGAGCATTCAGCTCCAGTTCCGTGCTGCCCAATGGGTTAGTGAGCAGCAGACGGTAGCGATCCTGGCCGGTTTGCTGCCAGAAAAAGCGGGCGTACACTTTTTGTTGGTCAGAAATATAAGCGAACGCGCCGCGAGTCTGATACTGATTAAGATTGCGCACGTCTTGCTGAT > NC_000913/1263123‑1263376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
