Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
765 |
46.1 |
2269152 |
93.8% |
2128464 |
105.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,105,571 |
C→T |
G34R (GGG→AGG) |
cpxR ← |
response regulator in two‑component regulatory system with CpxA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,105,571 | 0 | C | T | 100.0%
| 135.8
/ NA
| 43 | G34R (GGG→AGG) | cpxR | response regulator in two‑component regulatory system with CpxA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/22); total (21/22) |
ATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTC > NC_000913/4105447‑4105684
|
aTGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATGGTGGGcaacaa > 1:742301/1‑139 (MQ=255)
cAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCAc > 2:119648/1‑139 (MQ=255)
gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt > 1:1076020/1‑139 (MQ=255)
gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt > 2:260780/1‑139 (MQ=255)
gCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGtt > 2:137211/1‑139 (MQ=255)
tCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa < 1:672651/139‑1 (MQ=255)
tgtgtCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCtt < 2:1076020/139‑1 (MQ=255)
aGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 1:119648/139‑1 (MQ=255)
aGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 2:242977/139‑1 (MQ=255)
tGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagcagc < 1:260780/139‑1 (MQ=255)
tttCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct < 2:40641/139‑1 (MQ=255)
ttcGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGt < 2:989951/139‑1 (MQ=255)
cGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtca > 1:533528/1‑139 (MQ=255)
tCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACa < 2:105942/139‑1 (MQ=255)
aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 2:786775/91‑1 (MQ=255)
aGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca > 1:786775/1‑91 (MQ=255)
aaaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCATCTAACAGGATTTTATTCa < 2:533528/139‑1 (MQ=255)
aaTCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCAt > 2:218284/1‑139 (MQ=255)
cAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGt < 1:586401/139‑1 (MQ=255)
tGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTa < 2:409947/84‑1 (MQ=255)
tGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTa > 1:409947/1‑84 (MQ=255)
gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGa < 2:231070/71‑1 (MQ=255)
gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGa > 1:231070/1‑71 (MQ=255)
gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAg > 2:600368/1‑96 (MQ=255)
gCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAg < 1:600368/96‑1 (MQ=255)
tcgtcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATAc > 2:452224/1‑139 (MQ=255)
tcCAGAAGATCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTc > 1:91440/1‑139 (MQ=255)
gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct > 1:685937/1‑86 (MQ=255)
gaTCAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct < 2:685937/86‑1 (MQ=255)
cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa < 1:280270/40‑1 (MQ=255)
cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGaa > 2:280270/1‑40 (MQ=255)
cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCAtc > 1:118173/1‑50 (MQ=255)
cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCAtc < 2:118173/50‑1 (MQ=255)
cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct < 2:987769/83‑1 (MQ=255)
cAAGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGctct > 1:987769/1‑83 (MQ=255)
aaGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcatcatca > 1:723345/1‑94 (MQ=255)
aaGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcatcatca < 2:723345/94‑1 (MQ=255)
aGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca < 2:1028775/55‑1 (MQ=255)
aGCGCCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGagca > 1:1028775/1‑55 (MQ=255)
cgcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcat < 2:492212/86‑1 (MQ=255)
cgcCTGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGtcat > 1:492212/1‑86 (MQ=255)
tGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc < 2:436821/105‑1 (MQ=255)
tGTTCCCTATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTc > 1:436821/1‑105 (MQ=255)
|
ATGACAGGCGTCTGGTGTGTCTGGCGAAGTGCTTTTAATGTGTCGATACCATTTTTCTTCGGCATCATTACGTCAAGCAAAAGTAAATCAATGCTGTCGTCCAGAAGATCAAGCGCCTGTTCCCCATCGTGGGCAACAATCACGTTGAAGCCTTCCATCTCGAGCAGCTCCTTTAATAGGGAAGTCAGCTCTCGGTCATCATCAACTAACAGGATTTTATTCATTGTTTAAATACCTC > NC_000913/4105447‑4105684
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
