Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I2 R1	760	67.6	3323148	92.7%	3080558	109.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	928,926	G→A	R90R (CGC→CGT)	cydC ←	glutathione/cysteine ABC transporter export permease/ATPase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	928,926	0	G	A	100.0%	146.6 / NA	45	R90R (CGC→CGT)	cydC	glutathione/cysteine ABC transporter export permease/ATPase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (20/25); total (20/25)

ATCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACGCGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAGCTGTACAGTCCGGCAACCCCCGCAACC  >  NC_000913/928803‑929055

atCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGAGGGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtc                                                                                                                     <  2:1635608/139‑1 (MQ=255)

 tCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtcgt                                                                                                                   >  1:1109127/1‑139 (MQ=255)

 tCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtcgt                                                                                                                   >  2:281135/1‑139 (MQ=255)

 tCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtcgt                                                                                                                   >  1:1503155/1‑139 (MQ=255)

 tCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtcgt                                                                                                                   <  1:515624/139‑1 (MQ=255)

       gTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTa                                                                                                             >  2:290505/1‑139 (MQ=255)

        tATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtcg                                                                                                                    <  2:310433/131‑1 (MQ=255)

        tATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGcgtcg                                                                                                                    >  1:310433/1‑131 (MQ=255)

           cAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         <  1:1622946/139‑1 (MQ=255)

           cAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCACCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         <  2:1544244/139‑1 (MQ=255)

                   gCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGa                                                                                                                 <  2:937572/123‑1 (MQ=255)

                   gCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGa                                                                                                                 >  1:937572/1‑123 (MQ=255)

                   gCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCaa                                                                                                 >  2:944932/1‑139 (MQ=255)

                        cacGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         >  1:1053272/1‑126 (MQ=255)

                        cacGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         <  2:1053272/126‑1 (MQ=255)

                                tGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGc                                                                                    <  1:465088/139‑1 (MQ=255)

                                                               tCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGccc                                                     >  2:1046279/1‑139 (MQ=255)

                                                                  ggCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCa                                                  <  1:237409/139‑1 (MQ=255)

                                                                    cAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGccc                                                                                       >  1:1271454/1‑100 (MQ=255)

                                                                    cAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGccc                                                                                       <  2:1271454/100‑1 (MQ=255)

                                                                    cAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGc                                                <  1:1046279/139‑1 (MQ=255)

                                                                    cAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGc                                                >  2:809110/1‑139 (MQ=255)

                                                                    cAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGc                                                <  2:1503155/139‑1 (MQ=255)

                                                                      ggggAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCgg                                              <  1:1554529/139‑1 (MQ=255)

                                                                       gggAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCggg                                             <  1:809110/139‑1 (MQ=255)

                                                                              ggggCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTAAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCat                                       <  1:944932/139‑1 (MQ=255)

                                                                                  cagcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         <  2:1276586/69‑1 (MQ=255)

                                                                                  cagcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         >  1:1276586/1‑69 (MQ=255)

                                                                                  cagcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGccc                                                                                       >  2:114251/1‑87 (MQ=255)

                                                                                  cagcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGccc                                                                                       <  1:114251/87‑1 (MQ=255)

                                                                                   agcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGt                                  <  1:281135/139‑1 (MQ=255)

                                                                                   agcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGt                                  <  1:871565/139‑1 (MQ=255)

                                                                                    gcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         >  2:1389124/1‑67 (MQ=255)

                                                                                    gcaATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         <  1:1389124/67‑1 (MQ=255)

                                                                                        tttGCTGAAGGTGTAAATGCGCAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAg                             <  1:427849/139‑1 (MQ=255)

                                                                                                           cgcAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAGCTGTACAGTCCGGCAAccc          >  2:544555/1‑139 (MQ=255)

                                                                                                            gcAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCa                                                  <  2:1582883/98‑1 (MQ=255)

                                                                                                            gcAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCa                                                  >  1:1582883/1‑98 (MQ=255)

                                                                                                            gcAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAGCTGTACAGTCCGGCAAcccc         >  2:516958/1‑139 (MQ=255)

                                                                                                            gcAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAGCTGTACAGTCCGGCAAcccc         <  1:544555/139‑1 (MQ=255)

                                                                                                             cAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCcacg                                                            >  2:364583/1‑87 (MQ=255)

                                                                                                             cAGATGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCcacg                                                            <  1:364583/87‑1 (MQ=255)

                                                                                                                aTGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         <  1:710804/39‑1 (MQ=255)

                                                                                                                aTGCTGCAACACACGGAAAGTCGCGTCGTGACTTACCAg                                                                                                         >  2:710804/1‑39 (MQ=255)

                                                                                                                   ctgcAACACACGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAGCTGTACAGTCCGGCAACCCCCGCAAcc  >  2:199748/1‑139 (MQ=255)

ATCGAGCGTATCAACATCCGCCACCACGCGATTGAGCAATTCGCCCTGACGATAGCGCGCCAGTCCGGCAGGGGAGA‑GGGGCAGCAATTTGCTGAAGGTGTAAATGCGCAGATGCTGCAACACGCGGAAAGTCGCGTCGTGACTTACCAGACGTTCAAAATAGCGCCCGGCAGTACGGGTGATTGCTGCGCCACGCACGCCCGCAGCGGGTAGCATATAGTTGAAGCTGTACAGTCCGGCAACCCCCGCAACC  >  NC_000913/928803‑929055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A