Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I2 R1	760	67.6	3323148	92.7%	3080558	109.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,024,576	(T)_5→4	coding (609/624 nt)	rcsA →	transcriptional regulator of colanic acid capsular biosynthesis

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,024,572	0	T	.	100.0%	312.7 / NA	76	coding (605/624 nt)	rcsA	transcriptional regulator of colanic acid capsular biosynthesis
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (35/41); total (35/41)

AAATCTCTGACCAAATGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGT  >  NC_000913/2024437‑2024705

aaaTCTCTGACCAAATGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTCCCATGTCGTCCGACTGACGGATAATGTGACTAATGGTAtttt                                                                                                                                    >  1:1199661/1‑139 (MQ=255)

aaaTCTCTGACCAAATGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTAtttt                                                                                                                                    >  2:769743/1‑139 (MQ=255)

       tGACCAAATGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACa                                                                                                                            <  2:1328139/139‑1 (MQ=255)

        gACCAAATGA‑‑ATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATgc                                                                                                                         >  2:205902/1‑139 (MQ=255)

           cAAATGAATATCAAAGCCAAGACCATTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATgcg                                                                                                                        <  2:1199661/139‑1 (MQ=255)

               tGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTaa                                                                                                                    <  2:1462686/139‑1 (MQ=255)

                        aaGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTg                                                                                                           >  1:1614212/1‑139 (MQ=255)

                              aGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACtggt                                                                                                     <  2:1289764/139‑1 (MQ=255)

                                      tCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTccc                                                                                             <  1:769743/139‑1 (MQ=255)

                                            cATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGt                                                                                       <  1:500459/139‑1 (MQ=255)

                                            cATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGt                                                                                       >  1:540943/1‑139 (MQ=255)

                                               aaaGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAg                                                                                    >  2:909212/1‑139 (MQ=255)

                                                aaGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAgg                                                                                   <  2:1614212/139‑1 (MQ=255)

                                                aaGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAgg                                                                                   <  2:540943/139‑1 (MQ=255)

                                                     aaTATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGaa                                                                              <  1:1353990/139‑1 (MQ=255)

                                                      atatTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAAt                                                                             >  1:636309/1‑139 (MQ=255)

                                                            aaCGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATgcg                                                                                                                        >  2:1275667/1‑90 (MQ=255)

                                                            aaCGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATgcg                                                                                                                        <  1:1275667/90‑1 (MQ=255)

                                                             aCGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAgg                                                                                   >  2:1188293/1‑126 (MQ=255)

                                                             aCGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAgg                                                                                   <  1:1188293/126‑1 (MQ=255)

                                                             aCGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTg                                                                                >  2:1474386/1‑129 (MQ=255)

                                                             aCGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTg                                                                                <  1:1474386/129‑1 (MQ=255)

                                                                  aGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACa                                                                                                                            >  2:573485/1‑80 (MQ=255)

                                                                  aGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACa                                                                                                                            <  1:573485/80‑1 (MQ=255)

                                                                   gATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTAct                                                                    >  1:1312728/1‑135 (MQ=255)

                                                                   gATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTAct                                                                    <  2:1312728/135‑1 (MQ=255)

                                                                      cAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCttt                                                             <  2:1021667/139‑1 (MQ=255)

                                                                        aaaCGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtct                                                           >  1:504686/1‑139 (MQ=255)

                                                                         aaCGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                          >  2:170984/1‑139 (MQ=255)

                                                                               taataaACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACaaa                                                    >  1:575411/1‑139 (MQ=255)

                                                                                   aaaCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATa                                                <  1:1481595/139‑1 (MQ=255)

                                                                                      cAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAgg                                                                                   <  2:1517990/101‑1 (MQ=255)

                                                                                      cAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAgg                                                                                   >  1:1517990/1‑101 (MQ=255)

                                                                                        ggTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTc                                           >  1:597627/1‑139 (MQ=255)

                                                                                            aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACAtt                                                                                                              >  1:1200415/1‑68 (MQ=255)

                                                                                            aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACAtt                                                                                                              <  2:1200415/68‑1 (MQ=255)

                                                                                            aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGa                                                                         <  1:1382983/105‑1 (MQ=255)

                                                                                            aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGa                                                                         >  2:1382983/1‑105 (MQ=255)

                                                                                            aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGa                                       >  1:794376/1‑139 (MQ=255)

                                                                                            aTCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGa                                       >  2:757683/1‑139 (MQ=255)

                                                                                              cTACCATGTCGTCCGACTGACTGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     <  2:591384/139‑1 (MQ=255)

                                                                                              cTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     <  2:636309/139‑1 (MQ=255)

                                                                                              cTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     >  2:1489160/1‑139 (MQ=255)

                                                                                               tACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGc                                    <  1:757683/139‑1 (MQ=255)

                                                                                                   aTGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGtt                                                                                                 >  2:954520/1‑74 (MQ=255)

                                                                                                   aTGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGtt                                                                                                 <  1:954520/74‑1 (MQ=255)

                                                                                                   aTGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     <  1:168654/134‑1 (MQ=255)

                                                                                                   aTGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     >  2:168654/1‑134 (MQ=255)

                                                                                                   aTGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTg                                >  1:222998/1‑139 (MQ=255)

                                                                                                   aTGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTg                                <  1:205902/139‑1 (MQ=255)

                                                                                                    tGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     <  2:825955/133‑1 (MQ=255)

                                                                                                    tGTCGTCCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                     >  1:825955/1‑133 (MQ=255)

                                                                                                       cgtcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTc                            <  2:608593/139‑1 (MQ=255)

                                                                                                         tcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGaa                                                                              <  2:1059471/87‑1 (MQ=255)

                                                                                                         tcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGaa                                                                              >  1:1059471/1‑87 (MQ=255)

                                                                                                         tcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAACGATACCGCCCTGATGCCCTGCTTCAt                          >  2:775884/1‑139 (MQ=255)

                                                                                                         tcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCa                           >  2:278887/1‑138 (MQ=255)

                                                                                                         tcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCa                           <  1:278887/138‑1 (MQ=255)

                                                                                                         tcCGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCAt                          <  1:254477/139‑1 (MQ=255)

                                                                                                          ccGACTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGA‑TACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTa                        <  2:1029868/139‑1 (MQ=255)

                                                                                                              cTGACGGATAATGTGACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAg                     >  2:45724/1‑139 (MQ=255)

                                                                                                                           tgACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGt                                                                                       >  1:209685/1‑60 (MQ=255)

                                                                                                                           tgACTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGt                                                                                       <  2:209685/60‑1 (MQ=255)

                                                                                                                             aCTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTg                                                                                >  2:863176/1‑65 (MQ=255)

                                                                                                                             aCTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTg                                                                                <  1:863176/65‑1 (MQ=255)

                                                                                                                              cTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGtt                                                                                                 <  2:793189/47‑1 (MQ=255)

                                                                                                                              cTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGtt                                                                                                 >  1:793189/1‑47 (MQ=255)

                                                                                                                              cTAATGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCg     <  2:575411/139‑1 (MQ=255)

                                                                                                                                aaTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg   <  2:504686/139‑1 (MQ=255)

                                                                                                                                aaTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg   <  2:222998/139‑1 (MQ=255)

                                                                                                                                aaTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg   <  1:1489160/139‑1 (MQ=255)

                                                                                                                                 aTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTccc                                                                                             >  2:555856/1‑48 (MQ=255)

                                                                                                                                 aTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTccc                                                                                             <  1:555856/48‑1 (MQ=255)

                                                                                                                                 aTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                          <  1:1354186/83‑1 (MQ=255)

                                                                                                                                 aTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGt  >  2:703843/1‑139 (MQ=255)

                                                                                                                                 aTGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACTGGAGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                          >  2:1354186/1‑83 (MQ=255)

                                                                                                                                  tGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACtgg                                                                                                      <  1:959042/38‑1 (MQ=255)

                                                                                                                                  tGGTA‑TTTTGTCAACATGCGCTAACACATTCTGACtgg                                                                                                      >  2:959042/1‑38 (MQ=255)

AAATCTCTGACCAAATGAATATCAAAGCCAAGACCGTTTCATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGT  >  NC_000913/2024437‑2024705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A