Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F1 I2 R1 760 67.6 3323148 92.7% 3080558 109.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,699,413 G→A A219T (GCC→ACC)  yfhH → putative DNA‑binding transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,699,4130GA100.0% 286.3 / NA 87A219T (GCC→ACC) yfhHputative DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (45/42);  total (45/42)

CAGGCGTCGTCCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATGCCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTGCGCTGATTCAGC  >  NC_000913/2699281‑2699542
                                                                                                                                    |                                                                                                                                 
cAGGCGTCGTCCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGc                                                                                                                             >  1:540293/1‑139 (MQ=255)
     gtcgtcCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAg                                                                                                                        >  2:17528/1‑139 (MQ=255)
      tcgtcCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGc                                                                                                                       >  2:177892/1‑139 (MQ=255)
        gtcCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGt                                                                                                                     >  2:924385/1‑139 (MQ=255)
        gtcCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGt                                                                                                                     >  1:976775/1‑139 (MQ=255)
        gtcCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGt                                                                                                                     >  1:1601708/1‑139 (MQ=255)
        gtcCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGC‑‑TACTCCGAATACCCTGCAACAGCGTGc                                                                                                                   >  2:935736/1‑139 (MQ=255)
            ccTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCtt                                                                                                                 <  2:976775/139‑1 (MQ=255)
                aCGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGC‑‑TACTCCGAATACCCTGCAACAGCGTGCTTCTCAtt                                                                                                           <  1:935736/139‑1 (MQ=255)
                  gATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAtt                                                                                                           <  1:41362/139‑1 (MQ=255)
                  gATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAtt                                                                                                           <  1:147844/139‑1 (MQ=255)
                  gATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAtt                                                                                                           <  2:1419077/139‑1 (MQ=255)
                    tCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         <  2:858503/139‑1 (MQ=255)
                            taGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATAc                                                                                                 <  1:1289697/139‑1 (MQ=255)
                            taGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATAc                                                                                                 <  2:540293/139‑1 (MQ=255)
                             aGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTCGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGTCTGTATAcc                                                                                                >  2:142368/1‑139 (MQ=255)
                              gCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         <  1:1250897/129‑1 (MQ=255)
                              gCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         >  2:1250897/1‑129 (MQ=255)
                                   ttCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGcc                                                                                          <  2:337156/139‑1 (MQ=255)
                                   ttCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGcc                                                                                          >  2:1204993/1‑139 (MQ=255)
                                         cacCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCg                                                                                         <  1:870158/134‑1 (MQ=255)
                                         cacCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCg                                                                                         >  2:870158/1‑134 (MQ=255)
                                             ggTGTACGACGCGAGTTAATCCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACTCTGCAACAGCGTGCTTCTCATTGc                                                                                                         <  2:481393/114‑1 (MQ=255)
                                             ggTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         >  1:481393/1‑114 (MQ=255)
                                             ggTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAg                                                                                >  2:775030/1‑139 (MQ=255)
                                              gtgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGc                                                                               >  2:1378813/1‑139 (MQ=255)
                                              gtgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGc                                                                               >  1:1249668/1‑139 (MQ=255)
                                               tgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGCAAAGTGCTGGCGATTACCGGCATTCCTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTACCGAAGAACAAGCg                                                                              >  1:1015463/1‑139 (MQ=255)
                                               tgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         <  2:1232929/112‑1 (MQ=255)
                                               tgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         >  1:1232929/1‑112 (MQ=255)
                                               tgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCg                                                                              >  2:732115/1‑139 (MQ=255)
                                               tgtACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCg                                                                              >  2:943044/1‑139 (MQ=255)
                                                    gacgCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         >  1:1282093/1‑107 (MQ=255)
                                                    gacgCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         <  2:1282093/107‑1 (MQ=255)
                                                      cgcgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACa                                                                       >  2:1351049/1‑139 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCATCAGCGTGCTTCTCATTG‑CTGTATACCATTGCCGAAGAACAAGCGACAAACAGTg                                                                    >  2:1088479/1‑139 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAtt                                                                                                           <  1:26504/101‑1 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAtt                                                                                                           >  2:26504/1‑101 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAt                                                                                                            >  2:227166/1‑100 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCAt                                                                                                            <  1:227166/100‑1 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCa                                                                                               <  2:1543642/113‑1 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCa                                                                                               >  1:1543642/1‑113 (MQ=255)
                                                        cgAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGt                                                                     <  1:1378813/139‑1 (MQ=255)
                                                         gAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTg                                                                    >  2:700091/1‑139 (MQ=255)
                                                           gTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGc                                                                                                                             >  2:724630/1‑80 (MQ=255)
                                                           gTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGc                                                                                                                             <  1:724630/80‑1 (MQ=255)
                                                             tAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTc                                                                <  1:732115/139‑1 (MQ=255)
                                                                 ccTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAAtc                                                            <  2:513599/139‑1 (MQ=255)
                                                                  cTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAAtct                                                           <  1:943044/139‑1 (MQ=255)
                                                                    ggcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCt                                                                  >  1:648280/1‑130 (MQ=255)
                                                                    ggcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCt                                                                  <  2:648280/130‑1 (MQ=255)
                                                                    ggcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATctct                                                         >  2:42398/1‑139 (MQ=255)
                                                                     gcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCg                                                                                                                      <  1:1488280/77‑1 (MQ=255)
                                                                     gcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCg                                                                                                                      >  2:1488280/1‑77 (MQ=255)
                                                                     gcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTg                                                        >  2:748366/1‑139 (MQ=255)
                                                                     gcggcAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTg                                                        >  2:215878/1‑139 (MQ=255)
                                                                         cAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACaaa                                                                         <  2:1363264/118‑1 (MQ=255)
                                                                         cAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACaaa                                                                         >  1:1363264/1‑118 (MQ=255)
                                                                         cAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTG‑CTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGt                                                   <  1:1088479/139‑1 (MQ=255)
                                                                           gatgagatgCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGc                                                                                                                   >  2:1365212/1‑74 (MQ=255)
                                                                           gatgagatgCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGc                                                                                                                   <  1:1365212/74‑1 (MQ=255)
                                                                                   gctgcGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACaaa                                                                         <  1:732988/108‑1 (MQ=255)
                                                                                   gctgcGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACaaa                                                                         >  2:732988/1‑108 (MQ=255)
                                                                                           tGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGc                                                       >  1:244806/1‑118 (MQ=255)
                                                                                           tGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGc                                                       <  2:244806/118‑1 (MQ=255)
                                                                                             ggCGGAAAAGTGCTGGCGTTTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCAGCTTGTCACGCTCAGGGAATGTTaa                                >  2:1142930/1‑139 (MQ=255)
                                                                                             ggCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTaa                                <  2:1249668/139‑1 (MQ=255)
                                                                                                ggAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACgg                             <  1:700091/139‑1 (MQ=255)
                                                                                                    aaGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACg                                               >  1:587194/1‑117 (MQ=255)
                                                                                                    aaGTGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACg                                               <  2:587194/117‑1 (MQ=255)
                                                                                                       tGCTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCt                      >  1:1251926/1‑139 (MQ=255)
                                                                                                         cTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         >  2:479941/1‑54 (MQ=255)
                                                                                                         cTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGc                                                                                                         <  1:479941/54‑1 (MQ=255)
                                                                                                         cTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAAt                                                             >  2:1291913/1‑98 (MQ=255)
                                                                                                         cTGGCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAAt                                                             <  1:1291913/98‑1 (MQ=255)
                                                                                                            gCGATTACCGGCTTTGCTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGtt                                  >  2:1108139/1‑122 (MQ=255)
                                                                                                            gCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGTCAAACTGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGtt                                  <  1:1108139/122‑1 (MQ=255)
                                                                                                            gCGATTACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCa                 <  2:1334531/139‑1 (MQ=255)
                                                                                                                ttACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTgc             >  2:1282713/1‑139 (MQ=255)
                                                                                                                 tACCGGCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTgcg            <  1:1351049/139‑1 (MQ=255)
                                                                                                                     ggCTTTACTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTGCGCTGa        <  2:636677/139‑1 (MQ=255)
                                                                                                                           aCTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTGCGCTGAtt      >  1:970935/1‑135 (MQ=255)
                                                                                                                           aCTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTGCGCTGAtt      <  2:970935/135‑1 (MQ=255)
                                                                                                                           aCTCCGAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTGCGCTGATTcagc  <  1:1282713/139‑1 (MQ=255)
                                                                                                                                gAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGc                                                       >  2:1544906/1‑81 (MQ=255)
                                                                                                                                gAATACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGc                                                       <  1:1544906/81‑1 (MQ=255)
                                                                                                                                 aaTACCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGa                                                                             <  1:580913/58‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                 
CAGGCGTCGTCCCCTGACGATCTGTTATTAGCCATTTCCTACACCGGTGTACGACGCGAGTTAAACCTGGCGGCAGATGAGATGCTGCGAGTGGGCGGAAAAGTGCTGGCGATTACCGGCTTTACTCCGAATGCCCTGCAACAGCGTGCTTCTCATTGCCTGTATACCATTGCCGAAGAACAAGCGACAAACAGTGCTTCAATCTCTGCTTGTCACGCTCAGGGAATGTTAACGGATTTGCTGTTCATTGCGCTGATTCAGC  >  NC_000913/2699281‑2699542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A