Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I2 R1	760	67.6	3323148	92.7%	3080558	109.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,782,393	(C)_5→4	coding (334/4581 nt)	ypjA ←	adhesin‑like autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,782,389	0	C	.	100.0%	362.1 / NA	88	coding (338/4581 nt)	ypjA	adhesin‑like autotransporter
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (46/42); total (46/42)

TACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCAT  >  NC_000913/2782252‑2782518

tACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAcc                                                                                                                                  <  2:166684/139‑1 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  1:161202/1‑139 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  1:800213/1‑139 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  1:1369456/1‑139 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  2:1468370/1‑139 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  1:1345327/1‑139 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  2:1243073/1‑139 (MQ=255)

        tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                         >  2:1218810/1‑139 (MQ=255)

            tGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                     >  1:1466090/1‑139 (MQ=255)

            tGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                     >  2:439082/1‑139 (MQ=255)

                tATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACt                                                                                                                 >  1:1587030/1‑139 (MQ=255)

                tATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACt                                                                                                                 >  2:89610/1‑139 (MQ=255)

                  ttCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGt                                                                                                               >  1:183636/1‑139 (MQ=255)

                   tCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCCCTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                              >  2:195923/1‑122 (MQ=255)

                   tCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                              <  1:195923/124‑3 (MQ=255)

                   tCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTc                                                                                                              >  2:360279/1‑139 (MQ=255)

                   tCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTc                                                                                                              >  2:505329/1‑139 (MQ=255)

                       ttCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGcc                                                                                                          <  1:1243073/139‑1 (MQ=255)

                        tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                         >  1:1043636/1‑139 (MQ=255)

                          gCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCAcc                                                                                                       >  1:830413/1‑139 (MQ=255)

                               ccctccctCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTaa                                                                                                  <  2:1466090/139‑1 (MQ=255)

                               ccctccctCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATA‑CCCCTTTATAAACGTCCTGATTGCAACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAAt                                                                                                 >  2:286319/1‑139 (MQ=255)

                                   ccctcTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgtca                                                                                                                            <  1:504987/110‑5 (MQ=255)

                                   ccctcTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgtca                                                                                                                            >  2:504987/1‑106 (MQ=255)

                                     ctctACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                            <  2:1587030/139‑1 (MQ=255)

                                     ctctACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                            <  1:122046/139‑1 (MQ=255)

                                          cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                       >  1:1409353/1‑139 (MQ=255)

                                            cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTattatt                                                                                     >  2:1611392/1‑139 (MQ=255)

                                              tGAAGCACCGCCCTTAATGGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAg                                                                                   >  1:1090177/1‑139 (MQ=255)

                                                  gCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTg                                                                               <  2:183636/139‑1 (MQ=255)

                                                        cccTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCcac                                                                         >  2:1550741/1‑139 (MQ=255)

                                                           ttAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaa                                                                      <  2:1643400/139‑1 (MQ=255)

                                                           ttAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaa                                                                      <  1:1285486/139‑1 (MQ=255)

                                                                 gTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGtt                                                                <  2:1345327/139‑1 (MQ=255)

                                                                  tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTa                                                               >  2:169985/1‑139 (MQ=255)

                                                                  tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTa                                                               <  2:1029422/139‑1 (MQ=255)

                                                                  tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTa                                                               <  1:794775/139‑1 (MQ=255)

                                                                   cGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                   >  2:369411/1‑86 (MQ=255)

                                                                   cGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                   <  1:369411/86‑1 (MQ=255)

                                                                    gTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATg                                                             <  1:1529891/139‑1 (MQ=255)

                                                                     ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                            <  2:161202/139‑1 (MQ=255)

                                                                     ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                            <  1:1218810/139‑1 (MQ=255)

                                                                      tCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAGTTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                           <  1:1399422/139‑1 (MQ=255)

                                                                      tCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                           <  1:615929/139‑1 (MQ=255)

                                                                       ccATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACt                                                          >  2:207376/1‑139 (MQ=255)

                                                                          ttGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                     >  2:371175/1‑77 (MQ=255)

                                                                          ttGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                     <  1:371175/77‑1 (MQ=255)

                                                                            gCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCta                                                     >  1:1528380/1‑139 (MQ=255)

                                                                             cTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCtat                                                    >  2:382524/1‑139 (MQ=255)

                                                                                aTACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                       <  2:284751/101‑1 (MQ=255)

                                                                                aTACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                       >  1:284751/1‑101 (MQ=255)

                                                                                aTACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATc                                                 >  2:588415/1‑139 (MQ=255)

                                                                                 tACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCt                                                <  2:800213/139‑1 (MQ=255)

                                                                                  aCCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATTAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTg                                                                               >  1:297640/1‑107 (MQ=255)

                                                                                  aCCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATTAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTg                                                                               <  2:297640/107‑1 (MQ=255)

                                                                                   cccccTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTg                                              <  1:169985/139‑1 (MQ=255)

                                                                                      ccTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGata                                           <  1:1285513/139‑1 (MQ=255)

                                                                                        tttATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATc                                         >  1:548335/1‑139 (MQ=255)

                                                                                          tataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                              <  2:763487/53‑3 (MQ=255)

                                                                                          tataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                              >  1:763487/1‑51 (MQ=255)

                                                                                            taAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                            <  1:639398/116‑1 (MQ=255)

                                                                                            taAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                            >  2:639398/1‑116 (MQ=255)

                                                                                               aCGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                  <  2:374981/139‑1 (MQ=255)

                                                                                                  tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                            >  2:197616/1‑78 (MQ=255)

                                                                                                  tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                            <  1:197616/78‑1 (MQ=255)

                                                                                                  tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTc                               >  1:1183847/1‑139 (MQ=255)

                                                                                                  tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTc                               >  2:1587092/1‑139 (MQ=255)

                                                                                                   ccTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                           <  2:424267/110‑1 (MQ=255)

                                                                                                   ccTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                           >  1:424267/1‑110 (MQ=255)

                                                                                                    cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCaa                             >  2:1555865/1‑139 (MQ=255)

                                                                                                    cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCaa                             >  2:1213664/1‑139 (MQ=255)

                                                                                                    cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCaa                             >  1:596156/1‑139 (MQ=255)

                                                                                                      gATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGcc                                                                                                          >  1:1533287/1‑60 (MQ=255)

                                                                                                      gATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGcc                                                                                                          <  2:1533287/60‑1 (MQ=255)

                                                                                                        ttGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAg                         <  1:1213664/139‑1 (MQ=255)

                                                                                                        ttGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAg                         <  1:382524/139‑1 (MQ=255)

                                                                                                        ttGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAg                         <  1:381441/139‑1 (MQ=255)

                                                                                                         tGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                              >  2:1167154/1‑36 (MQ=255)

                                                                                                         tGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                              <  1:1167154/38‑3 (MQ=255)

                                                                                                          gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                       <  2:1528380/139‑1 (MQ=255)

                                                                                                          gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                       <  2:1369456/139‑1 (MQ=255)

                                                                                                          gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                       <  1:286319/139‑1 (MQ=255)

                                                                                                           ccACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                            >  2:67404/1‑101 (MQ=255)

                                                                                                           ccACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGa                                                            <  1:67404/101‑1 (MQ=255)

                                                                                                               tctcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAAt                            >  1:478329/1‑129 (MQ=255)

                                                                                                               tctcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAAt                            <  2:478329/129‑1 (MQ=255)

                                                                                                               tctcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCa                  <  1:1587092/139‑1 (MQ=255)

                                                                                                                 tcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                   <  2:1388514/40‑1 (MQ=255)

                                                                                                                 tcGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                   >  1:1388514/1‑40 (MQ=255)

                                                                                                                   gATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTg                                                                                                            <  2:410413/45‑1 (MQ=255)

                                                                                                                   gATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTg                                                                                                            >  1:410413/1‑45 (MQ=255)

                                                                                                                        tCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATAcc         <  1:1555865/139‑1 (MQ=255)

                                                                                                                        tCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATAcc         <  2:548335/139‑1 (MQ=255)

                                                                                                                           tACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCg      >  1:73160/1‑139 (MQ=255)

                                                                                                                               tgtgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCAt  <  1:86021/139‑1 (MQ=255)

                                                                                                                                 tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                       <  1:1049025/116‑1 (MQ=255)

                                                                                                                                 tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATCACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                       >  2:1049025/1‑116 (MQ=255)

TACCACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCAT  >  NC_000913/2782252‑2782518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A