Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I2 R1
|
766 |
55.6 |
2631458 |
94.7% |
2491990 |
109.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
354,592 |
G→A |
*629* (TAG→TAA) |
prpE → |
propionate‑‑CoA ligase |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 354,592 | 0 | G | A | 100.0%
| 221.4
/ NA
| 68 | *629* (TAG→TAA) | prpE | propionate‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/30); total (38/30) |
GATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATG > NC_000913/354471‑354726
|
gATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTAtt > 2:1180887/1‑128 (MQ=255)
gATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTAtt < 1:1180887/128‑1 (MQ=255)
cgccgcACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAG‑TATTGTCGGATGCGTCGCGCGGTGCATCCGGCa < 1:496689/139‑1 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCa > 2:249278/1‑120 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCa < 1:249278/120‑1 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGGCGATGCCTGAt > 1:858360/1‑139 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAt > 2:1016801/1‑139 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAt > 1:767479/1‑139 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAt > 2:601700/1‑139 (MQ=255)
ttGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGAt > 2:288412/1‑139 (MQ=255)
aaGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCAc > 1:31745/1‑116 (MQ=255)
aaGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCAc < 2:31745/116‑1 (MQ=255)
gaTCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCa < 1:288412/139‑1 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTAt > 2:701337/1‑135 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTAt < 1:701337/135‑1 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCg > 1:850153/1‑76 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGc > 2:466491/1‑87 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGc < 1:466491/87‑1 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGc > 2:127070/1‑139 (MQ=255)
cTGACGACCATTGATGATCCTGCGTCATTGGATCAGAT‑CCGTCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCg < 2:850153/76‑1 (MQ=255)
ttGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCt > 1:356388/1‑139 (MQ=255)
atgatCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGt < 2:286613/72‑1 (MQ=255)
atgatCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGt > 1:286613/1‑72 (MQ=255)
tgatCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc < 1:601700/139‑1 (MQ=255)
tCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTcgcg > 1:614403/1‑64 (MQ=255)
tCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTcgcg < 2:614403/64‑1 (MQ=255)
tCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAcgcg < 1:81841/111‑1 (MQ=255)
tCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGAcgcg > 2:81841/1‑111 (MQ=255)
ccTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTg < 1:537484/132‑1 (MQ=255)
ccTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTg > 2:537484/1‑132 (MQ=255)
ccTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTa > 2:384872/1‑139 (MQ=255)
ccTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTa > 1:974031/1‑139 (MQ=255)
cTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAg < 2:356388/139‑1 (MQ=255)
gCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGt < 2:245265/139‑1 (MQ=255)
cgtcgtTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGTGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTc > 2:1288933/1‑139 (MQ=255)
cgtcgtTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCg < 2:318949/83‑1 (MQ=255)
cgtcgtTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCg > 1:318949/1‑83 (MQ=255)
gtTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGAt > 1:470960/1‑139 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATg > 1:907417/1‑88 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATg < 2:907417/88‑1 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTg > 2:12833/1‑96 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTg < 1:12833/96‑1 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTa < 1:835211/115‑1 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTa > 2:835211/1‑115 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGt < 1:948364/133‑1 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGt > 2:948364/1‑133 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATa < 2:767479/139‑1 (MQ=255)
ttGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATa > 2:172272/1‑139 (MQ=255)
tCAGAT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgcg > 2:319546/1‑139 (MQ=255)
aT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATc < 1:1126685/54‑1 (MQ=255)
aT‑CCGCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATc > 2:1126685/1‑54 (MQ=255)
gCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt > 2:259550/1‑116 (MQ=255)
gCCAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt < 1:259550/116‑1 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGt < 2:388295/88‑1 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGt > 1:388295/1‑88 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTa > 2:554748/1‑101 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTa < 1:554748/101‑1 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTc < 2:1289724/133‑1 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTc > 1:1289724/1‑133 (MQ=255)
ccAGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCg > 1:557145/1‑139 (MQ=255)
aGGCGATGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCa < 2:974031/139‑1 (MQ=255)
tGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt < 2:862309/107‑1 (MQ=255)
tGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt > 1:862309/1‑107 (MQ=255)
tGGAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGac > 1:457283/1‑139 (MQ=255)
ggAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca < 1:172272/139‑1 (MQ=255)
ggAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca > 1:165465/1‑139 (MQ=255)
ggAAGAGTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca > 1:968838/1‑139 (MQ=255)
agTAAGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATg < 1:1016801/139‑1 (MQ=255)
|
GATCCGGAAAAATGCTGCGCCGCACGATCCAGGCGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGAT‑CCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATG > NC_000913/354471‑354726
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A