Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I2 R1
|
766 |
55.6 |
2631458 |
94.7% |
2491990 |
109.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,425,980 |
G→A |
pseudogene (351/453 nt) |
ydaY → |
pseudogene, Rac prophage,Phage or Prophage Related |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,425,980 | 0 | G | A | 100.0%
| 140.5
/ NA
| 45 | pseudogene (351/453 nt) | ydaY | pseudogene, Rac prophage,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (22/23); total (22/23) |
TGGAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAGCTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTG > NC_000913/1425847‑1426102
|
tGGAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGcc < 2:412172/139‑1 (MQ=255)
aaTATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAg < 2:717546/139‑1 (MQ=255)
cAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa > 2:86349/1‑139 (MQ=255)
cAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa > 1:360031/1‑139 (MQ=255)
cAGAACGAGGGATCGCGCCGCTTAAGCAGACTCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAACAGCAGTAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTa > 2:326423/1‑139 (MQ=255)
aaCGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCg > 1:1108471/1‑139 (MQ=255)
cGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGa > 2:1210767/1‑139 (MQ=255)
gggATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGtt < 1:1129112/139‑1 (MQ=255)
gATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCg < 2:525897/139‑1 (MQ=255)
gctTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGaaa > 1:820224/1‑139 (MQ=255)
cAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCa < 1:570890/139‑1 (MQ=255)
gCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAg > 2:1126799/1‑139 (MQ=255)
gCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAg > 1:754852/1‑139 (MQ=255)
agcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTg > 1:1073607/1‑64 (MQ=255)
agcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTg < 2:1073607/64‑1 (MQ=255)
gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCgg < 2:1003424/88‑1 (MQ=255)
gcagcCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCgg > 1:1003424/1‑88 (MQ=255)
gccagcATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCAcc < 2:1108471/139‑1 (MQ=255)
cATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCggt > 2:158347/1‑64 (MQ=255)
cATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCggt < 1:158347/64‑1 (MQ=255)
ccAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa > 2:122704/1‑89 (MQ=255)
ccAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa < 1:122704/89‑1 (MQ=255)
agagCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa > 2:108244/1‑80 (MQ=255)
agagCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGa < 1:108244/80‑1 (MQ=255)
agagCAGCAGAAG‑CAGGATACGACAAAAAAGCCATAACTGCCCAGCGGAGGTTATCGGAGTTCCGGGGAGAAAGAGGTGAAAAGGCAAGATGGAATGGAGAAAAACAGAGGTTGCCACCAAAAAAGCAACCATAAATac > 2:855323/1‑138 (MQ=255)
cagcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGAccc < 2:754852/139‑1 (MQ=255)
agcagAAGACGGCATACGATATAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGATATAGAccc < 1:855323/139‑1 (MQ=255)
agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCg < 2:420942/59‑1 (MQ=255)
agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCg > 1:420942/1‑59 (MQ=255)
agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCg < 1:1210767/139‑1 (MQ=255)
agcagAAG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACAGGAACAAGAAATAGACCCg > 2:924249/1‑139 (MQ=255)
aaG‑CAGGATACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCt < 1:86349/139‑1 (MQ=255)
aTACGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAg < 2:820224/139‑1 (MQ=255)
cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCg > 1:392874/1‑106 (MQ=255)
cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCg < 2:392874/106‑1 (MQ=255)
cGATAAAAAAGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAgttg > 2:920498/1‑139 (MQ=255)
aaaaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGtt > 2:246135/1‑38 (MQ=255)
aaaaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGtt < 1:246135/38‑1 (MQ=255)
aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAg < 1:1225751/130‑1 (MQ=255)
aaaaGCCATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAg > 2:1225751/1‑130 (MQ=255)
ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGAccc > 1:707317/1‑112 (MQ=255)
ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTa < 2:372948/120‑1 (MQ=255)
ccATAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTa > 1:372948/1‑120 (MQ=255)
ccATAACGGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGAccc < 2:707317/112‑1 (MQ=255)
aTAACTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATa < 2:47713/105‑1 (MQ=255)
|
TGGAATATACGGCAGAACGAGGGATCGCGCTGCTTAAGCAGAATCCAGAGTTGTACTGGCAGATCCTTGCAGAAGCAGCCAGCATCGCCCAGGGTAAAGAGCAGCAGAAG‑CAGGATACGATAAAAAAGCCATAGCTGCCCAGCGGTGGTTATCGGAGTTCGGGGGAGAAAGGGGGGAAAAGGCAAGATGGAAGCGAGAAAAACTCAGGTTGCCACCGATACCGGAACCAGAAATAGACCCGGTGCTTAAGGAGTTG > NC_000913/1425847‑1426102
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
