Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F1 I1 R1	778	68.7	3228504	93.4%	3015422	109.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	679,874	G→A	G123R (GGG→AGG)	ybeU →	DUF1266 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	679,874	0	G	A	100.0%	297.1 / NA	91	G123R (GGG→AGG)	ybeU	DUF1266 family protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/53); total (38/53)

CTCTTCCCCTGAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGGGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCTATTCGTTAG  >  NC_000913/679741‑680009

ctctTCCCCTGAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGttt                                                                                                                                    >  1:767789/1‑139 (MQ=255)

ctctTCCCCTGAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGttt                                                                                                                                    <  1:907482/139‑1 (MQ=255)

     ccccTGAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTc                                                                                                                               >  2:368954/1‑139 (MQ=255)

          gAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACggg                                                                                                                          <  1:1166285/139‑1 (MQ=255)

           aaGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGt                                                                                                                         >  1:483878/1‑139 (MQ=255)

                tGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    >  2:291449/1‑139 (MQ=255)

                tGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    >  1:369785/1‑139 (MQ=255)

                tGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    <  2:1592175/139‑1 (MQ=255)

                tGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    >  2:257275/1‑139 (MQ=255)

                tGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    >  1:1377457/1‑139 (MQ=255)

                tGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGATTGATTTATACCCAATTCGTTGCCCAATCCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    <  2:971248/139‑1 (MQ=255)

                 ggAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtgt                                                                                                                   <  2:369785/139‑1 (MQ=255)

                    aaGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCt                                                                                                                <  2:767789/139‑1 (MQ=255)

                         ttAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTcaaca                                                                                                           >  1:1089110/1‑139 (MQ=255)

                            aTTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGt                                                                                                        <  1:73771/139‑1 (MQ=255)

                              tGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTgg                                                                                                      <  2:860088/139‑1 (MQ=255)

                                cTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCt                                                                                                    <  2:762739/139‑1 (MQ=255)

                                            agagagGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAagaaga                                                                                        <  1:1527607/139‑1 (MQ=255)

                                            agagagGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAagaaga                                                                                        <  2:483878/139‑1 (MQ=255)

                                                agGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAAGGGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCg                                                                                                                       >  1:386174/1‑105 (MQ=255)

                                                agGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAAGGGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCg                                                                                                                       <  2:386174/105‑1 (MQ=255)

                                                  ggTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGttt                                                                                  >  1:377887/1‑139 (MQ=255)

                                                      gATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATgg                                                                              >  2:254091/1‑139 (MQ=255)

                                                          tataCCCAATTCGTTGCACAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGc                                                                          >  1:924307/1‑139 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAagaaga                                                                                        >  1:1085330/1‑118 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAagaaga                                                                                        <  2:1085330/118‑1 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   <  2:97948/139‑1 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   <  2:1377457/139‑1 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   <  2:871387/139‑1 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   <  2:261948/139‑1 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   >  1:1330817/1‑139 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   <  1:291449/139‑1 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   >  2:755672/1‑139 (MQ=255)

                                                                 aaTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcg                                                                   >  1:1282037/1‑139 (MQ=255)

                                                                  aTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  <  1:783355/139‑1 (MQ=255)

                                                                  aTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  <  1:755672/139‑1 (MQ=255)

                                                                  aTTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  >  1:303329/1‑139 (MQ=255)

                                                                   ttCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGgaagaa                                                                                          >  1:1265473/1‑114 (MQ=255)

                                                                   ttCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGgaagaa                                                                                          <  2:1265473/114‑1 (MQ=255)

                                                                   ttCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgcg                                                                 >  1:261313/1‑139 (MQ=255)

                                                                     cGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTc                                                               <  1:368954/139‑1 (MQ=255)

                                                                      gTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgc                                                                    <  1:127540/133‑1 (MQ=255)

                                                                      gTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgc                                                                    >  2:127540/1‑133 (MQ=255)

                                                                      gTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCt                                                              <  2:924307/139‑1 (MQ=255)

                                                                         gCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTg                                                                                                       <  1:16149/95‑1 (MQ=255)

                                                                         gCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTg                                                                                                       >  2:16149/1‑95 (MQ=255)

                                                                         gCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATg                                                           >  2:868521/1‑139 (MQ=255)

                                                                               aCCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAg                                                     <  1:677430/139‑1 (MQ=255)

                                                                                 cGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCt                                                   <  1:254091/139‑1 (MQ=255)

                                                                                 cGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCt                                                   <  2:1237718/139‑1 (MQ=255)

                                                                                    tATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTACAATcgcg                                                                   >  1:223914/1‑120 (MQ=255)

                                                                                    tATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTACAATcgcg                                                                   <  2:223914/120‑1 (MQ=255)

                                                                                     aTGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCAcc                                               <  1:872956/139‑1 (MQ=255)

                                                                                      tgtgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcg                                                                     <  1:619227/116‑1 (MQ=255)

                                                                                      tgtgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcg                                                                     >  2:619227/1‑116 (MQ=255)

                                                                                        tgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCg                                                                                                                       <  2:116473/64‑1 (MQ=255)

                                                                                        tgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCg                                                                                                                       >  1:116473/1‑64 (MQ=255)

                                                                                        tgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCAtt                                            <  1:257275/139‑1 (MQ=255)

                                                                                        tgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCAtt                                            <  1:1528407/139‑1 (MQ=255)

                                                                                        tgCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCAtt                                            <  2:377887/139‑1 (MQ=255)

                                                                                           tgtgGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    <  1:502443/64‑1 (MQ=255)

                                                                                           tgtgGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    >  2:502443/1‑64 (MQ=255)

                                                                                              ggggAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTATGTCACAGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATc                                      >  1:932005/1‑139 (MQ=255)

                                                                                                  aa‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    >  1:879285/1‑57 (MQ=255)

                                                                                                  aa‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGgtg                                                                                                                    <  2:879285/57‑1 (MQ=255)

                                                                                                  aa‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGt                                                          <  1:475482/115‑1 (MQ=255)

                                                                                                  aa‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGt                                                          >  2:475482/1‑115 (MQ=255)

                                                                                                  aa‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCAcc                                               <  2:1389809/126‑1 (MQ=255)

                                                                                                  aa‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCAcc                                               >  1:1389809/1‑126 (MQ=255)

                                                                                                     gggggAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCt                                >  2:1192168/1‑139 (MQ=255)

                                                                                                        ggAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  >  1:1052751/1‑102 (MQ=255)

                                                                                                        ggAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  <  2:1052751/102‑1 (MQ=255)

                                                                                                        ggAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGa                             >  1:31077/1‑139 (MQ=255)

                                                                                                         gAATCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGAt                            <  1:904943/139‑1 (MQ=255)

                                                                                                          aaTCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATg                           <  2:1545647/139‑1 (MQ=255)

                                                                                                          aaTCAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAACTCACCATTACTATCACAGCTGGATg                           <  2:773786/139‑1 (MQ=255)

                                                                                                             cAAAGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCAc                        <  1:1564358/139‑1 (MQ=255)

                                                                                                              aaaGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACt                       <  2:413132/139‑1 (MQ=255)

                                                                                                                aGCCTGGGATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTAt                     >  2:695213/1‑139 (MQ=255)

                                                                                                                      ggATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCAt                                             <  1:828784/109‑1 (MQ=255)

                                                                                                                      ggATTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCAt                                             >  2:828784/1‑109 (MQ=255)

                                                                                                                        aTTATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGc             <  2:303329/139‑1 (MQ=255)

                                                                                                                          tATGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCt           <  1:868521/139‑1 (MQ=255)

                                                                                                                            tGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAAt                                                                       <  1:396103/77‑1 (MQ=255)

                                                                                                                            tGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAAt                                                                       >  2:396103/1‑77 (MQ=255)

                                                                                                                            tGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  <  2:328695/82‑1 (MQ=255)

                                                                                                                            tGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATcgcgc                                                                  >  1:328695/1‑82 (MQ=255)

                                                                                                                            tGTTCGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCTAt         <  1:695213/139‑1 (MQ=255)

                                                                                                                                cGAATGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCTATTCGt     >  2:672300/1‑139 (MQ=255)

                                                                                                                                   aTGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCTATTCGTTAg  <  1:672300/139‑1 (MQ=255)

                                                                                                                                   aTGAGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCTATTCGTTAg  <  1:1511040/139‑1 (MQ=255)

CTCTTCCCCTGAAGAGTGGAAAGCATTAATTGCTGGTGGCTCGGAGAGAGGGTTGATTTATACCCAATTCGTTGCCCAAACCGCTATGTGCTGTGGGGAA‑GGGGGAATCAAAGCCTGGGATTATGTTCGAATGGGGTTTCTGTCACGGGTCGGTGTGCTCAACAAGTGGCTGACGGAAGAAGAGAGTTTATGGCTGCAATCGCGCGTCTATGTACGAGCTCACCATTACTATCACAGCTGGATGCACTATTTTTCCGCCTATTCGTTAG  >  NC_000913/679741‑680009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A