Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I1 R1
|
778 |
68.7 |
3228504 |
93.4% |
3015422 |
109.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,205,246 |
C→T |
pseudogene (843/1134 nt) |
aaaE → |
pseudogene, phage terminase protein A family, e14 prophage,Phage or Prophage Related |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,205,246 | 0 | C | T | 100.0%
| 157.6
/ NA
| 49 | pseudogene (843/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (26/23); total (26/23) |
GATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTCC > NC_000913/1205115‑1205380
|
gATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTc > 1:1439384/1‑139 (MQ=255)
aTCGCTACATCCTCGAAGAGGCCATAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGaa < 2:800343/139‑1 (MQ=255)
aCATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTacac > 1:1481730/1‑139 (MQ=255)
cATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTaca < 2:521504/137‑1 (MQ=255)
cATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTaca > 1:521504/1‑137 (MQ=255)
gAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGt < 2:913494/139‑1 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCGCATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAAc > 1:924567/1‑129 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCaa < 2:1340572/128‑1 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCaa > 1:1340572/1‑128 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAAc < 2:924567/129‑1 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAAc > 1:820671/1‑129 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAAc < 2:820671/129‑1 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGtccgatc > 1:755273/1‑139 (MQ=255)
aGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTc < 2:349717/110‑1 (MQ=255)
aGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTc > 1:349717/1‑110 (MQ=255)
ggcgAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTATCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGaaa < 1:801516/139‑1 (MQ=255)
cAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAgcg < 2:1439384/139‑1 (MQ=255)
aCCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTGCACCAACATGTCCGATCCGATGaaa > 2:4514/1‑109 (MQ=255)
aCCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTGCACCAACATGTCCGATCCGATGaaa < 1:4514/109‑1 (MQ=255)
gACCCCTTCTGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTCAATCGGGGCGCTTtcatc > 1:1548472/1‑139 (MQ=255)
cccTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACGCCAACATGt > 2:979906/1‑85 (MQ=255)
cccTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGt < 1:979906/85‑1 (MQ=255)
aCCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATcaca > 2:986488/1‑139 (MQ=255)
ccGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCcat > 1:1040175/1‑139 (MQ=255)
ccGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCcat > 2:1161222/1‑139 (MQ=255)
cGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCcatc < 1:831291/139‑1 (MQ=255)
cGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCcatc < 2:1481730/139‑1 (MQ=255)
gCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCcatca < 1:848781/137‑1 (MQ=255)
gCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCcatca > 2:848781/1‑137 (MQ=255)
cacaTGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTg < 2:870712/139‑1 (MQ=255)
acaTGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTgg > 2:531335/1‑139 (MQ=255)
tGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTa > 2:1058431/1‑48 (MQ=255)
tGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTa < 1:1058431/48‑1 (MQ=255)
gACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCgggg < 2:318388/99‑1 (MQ=255)
gACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCgggg > 1:318388/1‑99 (MQ=255)
ttGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCgggg > 2:1286007/1‑95 (MQ=255)
ttGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCgggg < 1:1286007/95‑1 (MQ=255)
tGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGtccgat < 2:1523838/58‑1 (MQ=255)
tGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGtccgat > 1:1523838/1‑58 (MQ=255)
tGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGaa > 1:1047787/1‑66 (MQ=255)
tGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGAACCGATGaa < 2:1047787/66‑1 (MQ=255)
aaGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGt < 1:1161222/139‑1 (MQ=255)
gACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCg > 2:1183665/1‑139 (MQ=255)
gAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTtc > 2:72187/1‑86 (MQ=255)
gAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTtc < 1:72187/86‑1 (MQ=255)
gAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCaaa > 2:1542293/1‑139 (MQ=255)
gAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCaaa > 2:479863/1‑139 (MQ=255)
aaCCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCaaaa < 2:1612128/139‑1 (MQ=255)
tCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTcc > 1:262977/1‑139 (MQ=255)
|
GATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATTCC > NC_000913/1205115‑1205380
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
