Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I2 R1
|
762 |
35.5 |
1545288 |
95.5% |
1475750 |
117.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,205,246 |
C→T |
pseudogene (843/1134 nt) |
aaaE → |
pseudogene, phage terminase protein A family, e14 prophage,Phage or Prophage Related |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,205,246 | 0 | C | T | 100.0%
| 106.9
/ NA
| 34 | pseudogene (843/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/16); total (18/16) |
GGATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATT > NC_000913/1205114‑1205378
|
ggATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCAtt < 2:188857/139‑1 (MQ=255)
ggATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCAtt < 1:636537/139‑1 (MQ=255)
gATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTc > 2:721120/1‑139 (MQ=255)
aTCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGaa < 2:4995/139‑1 (MQ=255)
tCGCTACATCCTCGAAGAGGCCCAAGCGGCGAACAAAATCAGCCCGGCCAGTGAGTCACCCATCGACCCCTCCGGGGCGACCAGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAAc > 2:80099/1‑139 (MQ=255)
cTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTac > 2:398537/1‑139 (MQ=255)
tACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTaca < 1:721120/139‑1 (MQ=255)
tCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACAt > 1:568501/1‑139 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGaa > 1:111820/1‑119 (MQ=255)
gCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGaa < 2:111820/119‑1 (MQ=255)
ggcgAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGaaa < 1:370847/139‑1 (MQ=255)
tCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAgc < 2:568501/139‑1 (MQ=255)
cAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAgcg < 1:469607/139‑1 (MQ=255)
gTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTg > 1:735661/1‑139 (MQ=255)
tCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGgc < 2:735661/139‑1 (MQ=255)
aCCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGgcgc > 2:735881/1‑139 (MQ=255)
cGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTtcat > 2:459658/1‑139 (MQ=255)
gCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATc < 1:346262/139‑1 (MQ=255)
ccGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGtccga < 1:46790/76‑1 (MQ=255)
ccGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGtccga > 2:46790/1‑76 (MQ=255)
gCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATg < 1:81438/139‑1 (MQ=255)
cacaTGACCTTGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGCCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTg < 1:425220/139‑1 (MQ=255)
ttGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCggg < 2:462954/94‑1 (MQ=255)
ttGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCggg > 1:462954/1‑94 (MQ=255)
ttGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCgg > 1:259614/1‑139 (MQ=255)
ttGCTGATGAAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCgg > 1:197433/1‑139 (MQ=255)
gaAGACCTGAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGTCAACGTgg > 2:749122/1‑139 (MQ=255)
gAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCaaa > 2:528310/1‑139 (MQ=255)
gAACCCCGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCaaa > 2:7789/1‑139 (MQ=255)
cGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGAcc > 2:411603/1‑106 (MQ=255)
cGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGAcc < 1:411603/106‑1 (MQ=255)
cGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCAtt > 2:238233/1‑139 (MQ=255)
cGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCAtt < 1:238233/139‑1 (MQ=255)
cGTCACTATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCAtt > 2:534938/1‑139 (MQ=255)
|
GGATTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGAACCCCGTCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTGGTCGGCAAAACCATT > NC_000913/1205114‑1205378
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
