Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F1 I1 R1 770 68.5 3470224 91.7% 3182195 103.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 4,543,180 (TCCCTCAGTTCTACAGCGGCTCTG)1→2 coding (66/549 nt) fimA → major type 1 subunit fimbrin (pilin)

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4543149 =14 (0.210)53 (0.840) 37/188 0.5 83.5% coding (35/549 nt) fimA major type 1 subunit fimbrin (pilin)
?NC_000913 = 4543172 8 (0.130)coding (58/549 nt) fimA major type 1 subunit fimbrin (pilin)

ACCTGTCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4543293‑4543149
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagccgCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTTGTAAACGAGTTTG  <  NC_000913/4543172‑4543037
                                                                                                                                                                                                                                                                                         
ACCTGTCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACA                                                                                                                                                >  1:572597/1‑139
  CTGTCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGA                                                                                                                                              >  1:939950/1‑139
    GTCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            <  2:1471925/139‑1
     TCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            <  1:1313429/138‑1
     TCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            >  2:1313429/1‑138
          ACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGT                                                                                                                                      >  1:484362/1‑139
          ACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGT                                                                                                                                      >  1:853119/1‑139
                 GGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTG                                                                                                                               <  2:1472402/139‑1
                       ATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGAC                                                                                                                         <  2:418704/139‑1
                            CAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            >  2:828646/1‑115
                            CAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            <  1:828646/115‑1
                               AGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGA                                                                                                                 <  2:939950/139‑1
                               AGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGA                                                                                                                 <  2:484362/139‑1
                                  CTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTTGTACTGAGGGACAGAGCCGACAG                                                                                                              >  1:1284268/1‑139
                                    GCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAA                                                                                                            >  2:1653056/1‑139
                                      ATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                    >  1:458642/1‑129
                                      ATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                    <  2:458642/129‑1
                                         AACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACG                                                                                                       >  2:557038/1‑139
                                         AACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAA                                                                                                            <  2:622049/134‑1
                                         AACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAA                                                                                                            >  1:622049/1‑134
                                              CGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGC                                                                                                  <  1:1653056/139‑1
                                               GCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCC                                                                                                 >  1:752638/1‑139
                                                CAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAA                                                                                                            >  1:602055/1‑127
                                                CAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAA                                                                                                            <  2:602055/127‑1
                                                    CGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGT                                                                                            >  2:310300/1‑139
                                                       CGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTT                                                                                         <  1:79679/139‑1
                                                         TTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            <  1:1682550/86‑1
                                                         TTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            >  2:1682550/1‑86
                                                                 TTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATG                                                                               <  2:752638/139‑1
                                                                 TTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                    >  1:178442/1‑102
                                                                 TTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                    <  2:178442/102‑1
                                                                        TTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            >  1:897479/1‑71
                                                                        TTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGC                                                                                                                                            <  2:897479/71‑1
                                                                          AAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTT                                                                                         >  1:1252367/1‑120
                                                                          AAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTT                                                                                         <  2:1252367/120‑1
                                                                           AAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGATGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCT                                                                     >  2:1650422/1‑139
                                                                                     taatggtgggacCCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAAC                                                           >  2:248484/13‑139
                                                                                     TCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAAC                                                           >  2:1326307/1‑139
                                                                                          CCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTT                                                      <  2:572597/139‑1
                                                                                             TTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTA                                                   >  1:1588043/1‑139
                                                                                               AACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCT                                                                             <  1:919251/111‑1
                                                                                               AACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCT                                                                             >  2:919251/1‑111
                                                                                                    TCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGAC                                            >  2:1183611/1‑139
                                                                                                     CGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACA                                           >  2:700087/1‑139
                                                                                                     CGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTT                                                      >  2:99699/1‑128
                                                                                                     CGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTT                                                      <  1:99699/128‑1
                                                                                                     CGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAA                                                                <  1:224842/118‑1
                                                                                                     CGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAA                                                                >  2:224842/1‑118
                                                                                                       TGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATG                                         >  1:673383/1‑139
                                                                                                       TGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGA                                                                                                                 <  2:345118/67‑1
                                                                                                       TGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGA                                                                                                                 >  1:345118/1‑67
                                                                                                            GCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAG                                    <  1:248484/139‑1
                                                                                                            GCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAG                                    <  2:673383/139‑1
                                                                                                            GCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAG                                    <  1:310300/139‑1
                                                                                                              GGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTC                                  <  1:557038/139‑1
                                                                                                              GGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTC                                  <  2:853119/139‑1
                                                                                                               GCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCT                                                                          <  1:284460/98‑1
                                                                                                               GCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCT                                                                          >  2:284460/1‑98
                                                                                                               GCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAAT                                                                                      >  1:443672/1‑86
                                                                                                               GCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAAT                                                                                      <  2:443672/86‑1
                                                                                                                    AGCCGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCACTCGTTCTG                            >  2:1054930/1‑139
                                                                                                                       CGCTGTAGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTAC                         >  2:1136230/1‑139
                                                                                                                             AGAACTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTG                   <  1:1650422/139‑1
                                                                                                                                 CTGAGGGACAGAGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTT               <  1:1183611/139‑1
                                                                                                                                            AGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTTGTAAACGAGTT    >  2:1420365/1‑139
                                                                                                                                            AGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTTGTAAACGAGTT    >  2:1118195/1‑139
                                                                                                                                            AGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAA                                                 <  1:1400786/94‑1
                                                                                                                                            AGCCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAA                                                 >  2:1400786/1‑94
                                                                                                                                              CCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTTGTAAACGAGTTTG  <  2:280525/139‑1
                                                                                                                                              CCGCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTTGTAAACGAGTTTG  <  1:139905/139‑1
                                                                                                                                                                                                                                                                                         
ACCTGTCCTAACTGAACGGTTTGATCAACAGAGCCTGCATCAACTGCGCAAGCGGCGTTAACAACTTCCCCTTTAAAGTGAACGGTCCCACCATTAACCGTCGTGGCAGCGGCCAGAGCCGCTGTAGAACTGAGGGACAGAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4543293‑4543149
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagagccgCTGTAGAACTGAGGGACAGAGCCGACAGAACAACGATTGCCAGAGTTTTAATTTTCATGCTGCTTTCCTTTCAAAAAACTATTTCTAAATCGACATGGGCAGTCGTTCTGTACACTTTGTTTTGTAAACGAGTTTG  <  NC_000913/4543172‑4543037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A