Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F1 I1 R1
|
765 |
39.6 |
1867486 |
94.4% |
1762906 |
108.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,290,119 |
C→T |
C104C (TGC→TGT) |
nrfC → |
formate‑dependent nitrite reductase, 4Fe4S subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,290,119 | 0 | C | T | 100.0%
| 124.6
/ NA
| 39 | C104C (TGC→TGT) | nrfC | formate‑dependent nitrite reductase, 4Fe4S subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/21); total (18/21) |
ACAAGGTGCCGGAAGGCGTCTCGCGCCTGACGATTATTCGTAGCGAGCCGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGCCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTGCGCTTTATCCATCCGGTCACGAAGACGGC > NC_000913/4289986‑4290253
|
aCAAGGTGCCGGAAGGCGTCTCGCGCCTGACGATTATTCGTAGCGAGCCGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGAc < 2:206067/139‑1 (MQ=255)
gCGTCTCGCGCCTGACGATTATTCGTAGCGAGCCGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTcg > 2:10105/1‑139 (MQ=255)
cGTCTCGCGCCTGACGATTATTCGTAGCGAGCCGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACTTCTGTCCGACCGGTGCGTCTTTTcgc > 2:784140/1‑139 (MQ=255)
gACGATTATTCGTAGCGAGCCGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGt > 2:326008/1‑139 (MQ=255)
ccGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGt < 2:838894/128‑1 (MQ=255)
ccGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGt > 1:838894/1‑128 (MQ=255)
ccGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATc > 2:663974/1‑139 (MQ=255)
ccGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATc > 2:733874/1‑139 (MQ=255)
gCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCg < 2:46978/139‑1 (MQ=255)
ccTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCg < 1:326008/139‑1 (MQ=255)
ccTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCg < 1:733874/139‑1 (MQ=255)
gATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGtt < 2:690336/139‑1 (MQ=255)
tgtgAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGAtgct > 2:624565/1‑94 (MQ=255)
tgtgAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGAtgct < 1:624565/94‑1 (MQ=255)
gtgAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTc > 1:680611/1‑139 (MQ=255)
tcttcCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATcgc < 1:806040/139‑1 (MQ=255)
ttcCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATcgccg < 1:380148/139‑1 (MQ=255)
ttcCGTAAGTCTTGCCAGCACTGCCATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATcgccg < 1:10105/139‑1 (MQ=255)
tGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCg > 1:801290/1‑106 (MQ=255)
tGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCg < 2:801290/106‑1 (MQ=255)
gCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACcg > 2:730997/1‑139 (MQ=255)
ccAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGt > 2:275827/1‑70 (MQ=255)
ccAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGt < 1:275827/70‑1 (MQ=255)
tGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGtt > 1:53194/1‑100 (MQ=255)
tGCGATCATGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGtt < 2:53194/100‑1 (MQ=255)
tGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCg < 1:753625/89‑1 (MQ=255)
tGCGCCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCg > 2:753625/1‑89 (MQ=255)
gcgcCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTGCGCTTTatccatc < 1:140788/139‑1 (MQ=255)
gcgcCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTGCGCTTTatccatc < 1:301415/139‑1 (MQ=255)
gcCGTGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTGCGCTTTATCCATCCg < 2:680611/139‑1 (MQ=255)
tGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCgctgct < 2:541537/42‑1 (MQ=255)
tGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGAtgct > 1:541537/1‑42 (MQ=255)
tGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAg < 1:760868/90‑1 (MQ=255)
tGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAg > 2:760868/1‑90 (MQ=255)
tGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATcgccg > 1:850555/1‑103 (MQ=255)
tGCGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATcgccg < 2:850555/103‑1 (MQ=255)
cGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTgcgc < 2:490609/121‑1 (MQ=255)
cGTTGACGTCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTgcgc > 1:490609/1‑121 (MQ=255)
tCTGTCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTGCGCTTTATCCATCCGGTCACGAAGAcggc > 1:65097/1‑139 (MQ=255)
|
ACAAGGTGCCGGAAGGCGTCTCGCGCCTGACGATTATTCGTAGCGAGCCGCAGGGCGAATTTCCTGATGTGAAATATCGCTTCTTCCGTAAGTCTTGCCAGCACTGCGATCATGCGCCGTGCGTTGACGTCTGCCCGACCGGTGCGTCTTTTCGCGATGCTGCCAGTGGGATTGTCGATGTTAATCCGGATCTCTGCGTCGGTTGTCAGTACTGCATCGCCGCCTGTCCGTACCGCGTGCGCTTTATCCATCCGGTCACGAAGACGGC > NC_000913/4289986‑4290253
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
