Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F1 I1 R1 781 46.9 2231650 93.5% 2086592 109.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,757,753 Δ5 bp coding (969‑973/1005 nt) ldtE ← murein L,D‑transpeptidase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1757753 1757757 5 39 [0] [0] 40 ldtE murein L,D‑transpeptidase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 17577520 (0.000)38 (0.800) 30/214 0.4 100% coding (974/1005 nt) ldtE murein L,D‑transpeptidase
?NC_000913 1757758 = 0 (0.000)coding (968/1005 nt) ldtE murein L,D‑transpeptidase

GATK/CNVnator alignment

N/A