Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
781 |
46.9 |
2231650 |
93.5% |
2086592 |
109.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,519,189 |
T→C |
I126T (ATT→ACT) |
yfeD → |
DUF1323 family putative DNA‑binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,519,189 | 0 | T | C | 100.0%
| 151.4
/ NA
| 43 | I126T (ATT→ACT) | yfeD | DUF1323 family putative DNA‑binding protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (24/19); total (24/19) |
GCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGG > NC_000913/2519056‑2519320
|
gCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACg > 2:1078288/1‑139 (MQ=255)
cgcgCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCataaa > 2:828137/1‑139 (MQ=255)
gTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGc < 1:79753/139‑1 (MQ=255)
tCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAgg < 1:828137/139‑1 (MQ=255)
atcaACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCa < 1:1090255/127‑1 (MQ=255)
atcaACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCa > 2:1090255/1‑127 (MQ=255)
tagataATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTa > 1:387254/1‑139 (MQ=255)
tatGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCttttt > 2:1102930/1‑139 (MQ=255)
tGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTac > 2:127062/1‑139 (MQ=255)
gacagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTaca > 1:562465/1‑139 (MQ=255)
cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGa > 1:730752/1‑79 (MQ=255)
cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGa < 2:730752/79‑1 (MQ=255)
cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACgg < 1:920503/103‑1 (MQ=255)
cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACgg > 2:920503/1‑103 (MQ=255)
cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGc < 1:624883/104‑1 (MQ=255)
cagacaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGc > 2:624883/1‑104 (MQ=255)
acaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGtt > 1:588395/1‑122 (MQ=255)
acaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGtt > 1:939546/1‑122 (MQ=255)
acaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGtt < 2:588395/122‑1 (MQ=255)
acaTTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGtt < 2:939546/122‑1 (MQ=255)
ttGAGGAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGt < 2:122756/118‑1 (MQ=255)
ttGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGccat > 1:122756/1‑116 (MQ=255)
aGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACg < 2:142225/130‑1 (MQ=255)
aGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACg > 1:142225/1‑130 (MQ=255)
aGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCttttt > 1:779064/1‑115 (MQ=255)
aGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCttttt < 2:779064/115‑1 (MQ=255)
aGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTc > 2:970948/1‑139 (MQ=255)
cgcgCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTcgcg < 1:970948/139‑1 (MQ=255)
aaTTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAg < 2:562465/139‑1 (MQ=255)
gTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCa > 1:605557/1‑139 (MQ=255)
gAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTa > 2:117105/1‑90 (MQ=255)
gAATTCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTa < 1:117105/90‑1 (MQ=255)
tCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCa > 2:245966/1‑56 (MQ=255)
tCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCa < 1:245966/56‑1 (MQ=255)
tCGCAATTTCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTttgtt > 2:1043809/1‑139 (MQ=255)
tttCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGtt < 2:281626/70‑1 (MQ=255)
tttCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGtt > 1:281626/1‑70 (MQ=255)
ttCCTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGc > 2:448570/1‑139 (MQ=255)
cTCGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCg < 1:448570/139‑1 (MQ=255)
cGCCCGTCTCGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGTTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGAt > 1:98649/1‑139 (MQ=255)
tctcGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCg > 1:996438/1‑139 (MQ=255)
ctcGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCgg < 2:387254/139‑1 (MQ=255)
ctcGATACTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCgg < 1:1043809/139‑1 (MQ=255)
|
GCTCCTGGAGCACGCGCCCCGGCGTATCGACAAATCATCAACGCGATAGATAATATGACAGACATTGAGCAGGAAAAAGTCGCGCAATTTTTGTCACGTGAAGGAATTCGCAATTTCCTCGCCCGTCTCGATATTGACGAATCAGCATAAATAAAAAACGGCAGGATATTATCTCCTGCCGTTTATCTTTTTACACGCTAATTACTGCTGATTTTCGCGTTCAGCAATAAAATCCAGCGCTTTGTTGATACGCTCGATACTGCGG > NC_000913/2519056‑2519320
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
