Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F1 I2 R1
|
774 |
49.2 |
2112398 |
96.9% |
2046913 |
118.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
847,220 |
A→G |
intergenic (‑101/+38) |
glnP ← / ← glnH |
glutamine transporter subunit/glutamine transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 847,220 | 0 | A | G | 100.0%
| 155.7
/ NA
| 44 | intergenic (‑101/+38) | glnP/glnH | glutamine transporter subunit/glutamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (24/20); total (24/20) |
TGGCACTCCAGTCAAACTGCATATGTTGTTCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGAGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACTTTGT > NC_000913/847098‑847346
|
tGGCACTCCAGTCAAACTGCATATGTTGTTCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTg < 2:515939/139‑1 (MQ=255)
ccAGTCAAACTGCATATGTTGTTCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTa < 1:807236/139‑1 (MQ=255)
aGTCAAACTGCATATGTTGTTCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACa > 1:794662/1‑139 (MQ=255)
tGCAAATGTTGTTCCTGTTACCTTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCGCTCCCCATAGGGGGGAGGGAATTGCCAGTGCGTTTTACAGGTGTAGc < 2:268169/139‑1 (MQ=255)
cATATGTTGTTCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGt < 2:845726/139‑1 (MQ=255)
gttCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt < 1:217753/139‑1 (MQ=255)
tCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCg > 1:820906/1‑139 (MQ=255)
ccTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCgg > 2:249542/1‑139 (MQ=255)
tGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGtt < 2:549833/139‑1 (MQ=255)
gTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTc > 1:369718/1‑139 (MQ=255)
ttACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTTCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGgtgt > 2:668104/1‑119 (MQ=255)
ttACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGgtgt < 1:668104/119‑1 (MQ=255)
cGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGGTCAGTAc > 2:619559/1‑139 (MQ=255)
ggtgTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTCATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGa > 1:1028767/1‑139 (MQ=255)
aaaTAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCAt < 1:249542/139‑1 (MQ=255)
tCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt < 2:98786/114‑1 (MQ=255)
tCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt > 1:98786/1‑114 (MQ=255)
aGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTc < 2:427532/139‑1 (MQ=255)
ggTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGt > 2:396921/1‑139 (MQ=255)
ttaatGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt < 1:677285/99‑1 (MQ=255)
ttaatGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt > 2:677285/1‑99 (MQ=255)
gCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCg > 2:585604/1‑139 (MQ=255)
ccccGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGt > 2:477810/1‑139 (MQ=255)
cgcCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGt > 1:723851/1‑114 (MQ=255)
cgcCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGt < 2:723851/114‑1 (MQ=255)
cgcCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCa > 1:355016/1‑132 (MQ=255)
cgcCCCTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCa < 2:355016/132‑1 (MQ=255)
cTCACCCTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAAcg < 1:585604/139‑1 (MQ=255)
ccTAATCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCg < 1:477810/139‑1 (MQ=255)
aaTCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt < 2:552141/63‑1 (MQ=255)
aaTCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTAttt > 1:552141/1‑63 (MQ=255)
aaTCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGtt > 1:1029864/1‑68 (MQ=255)
aaTCCTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGtt < 2:1029864/68‑1 (MQ=255)
ccTCTCCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACt > 2:185211/1‑139 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGttat < 2:859254/51‑1 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGttat > 1:859254/1‑51 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTg > 1:1021740/1‑93 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTg < 2:1021740/93‑1 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACTTTGt > 1:193560/1‑139 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACTTTGt > 1:436156/1‑139 (MQ=255)
tcCCCATAGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACTTTGt > 2:363994/1‑139 (MQ=255)
tcCCCATAGGGGGGAGGGAACTACCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACTTTGt > 2:611986/1‑139 (MQ=255)
aGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGtt < 1:369631/54‑1 (MQ=255)
aGGGGGGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGtt > 2:369631/1‑54 (MQ=255)
|
TGGCACTCCAGTCAAACTGCATATGTTGTTCCTGTTACCGTGGTGTAAATAATCAAATTCAGGGTAATTAATGGCCCCGGAGCGGGTTTGCGCCCCTCACCCTAATCCTCTCCCCATAGGGGAGAGGGAACTGCCAGTGCGTTTTACAGGTGTAGCGTTATTATTTCGGTTCAGTACCGAACCATTTTTTGTAGATTTCGTTGTAAGTTCCGTTCTCGCGCAGGGTTTTCAACGCGCCGTTGACTTTGT > NC_000913/847098‑847346
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
