Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I2 R1
|
765 |
53.2 |
2691310 |
93.4% |
2513683 |
103.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
816,531 |
G→A |
V39V (GTC→GTT) |
ybhK ← |
putative CofD superfamily transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 816,531 | 0 | G | A | 100.0%
| 127.2
/ NA
| 40 | V39V (GTC→GTT) | ybhK | putative CofD superfamily transferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (21/19); total (21/19) |
TATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAG > NC_000913/816400‑816665
|
tATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATAc < 1:317977/139‑1 (MQ=255)
tCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACg > 2:1227994/1‑139 (MQ=255)
tCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACg > 1:759391/1‑139 (MQ=255)
gCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTAAAACGAGAACCCa < 2:759391/139‑1 (MQ=255)
ttCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGt < 2:595926/139‑1 (MQ=255)
cAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATgagaga > 2:675870/1‑139 (MQ=255)
ggCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACga < 1:832738/101‑1 (MQ=255)
ggCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACga > 2:832738/1‑101 (MQ=255)
ttGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGa < 2:519443/107‑1 (MQ=255)
ttGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGa > 1:519443/1‑107 (MQ=255)
cccAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAAc < 2:1093215/112‑1 (MQ=255)
cccAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAAc > 1:1093215/1‑112 (MQ=255)
cccAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCgag > 2:1290867/1‑139 (MQ=255)
ggCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCa > 2:72302/1‑139 (MQ=255)
ggCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCa > 2:76008/1‑139 (MQ=255)
gCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCaa > 2:998029/1‑139 (MQ=255)
aaTGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACga < 1:18962/76‑1 (MQ=255)
aaTGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACga > 2:18962/1‑76 (MQ=255)
gccgccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca < 1:72302/139‑1 (MQ=255)
ccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca < 1:173872/135‑1 (MQ=255)
ccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGaca > 2:173872/1‑135 (MQ=255)
ccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGAt < 1:998029/139‑1 (MQ=255)
ccTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGAt < 1:1290867/139‑1 (MQ=255)
cGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagcca > 1:1089578/1‑139 (MQ=255)
cGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagcca < 1:1227994/139‑1 (MQ=255)
ccccGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGac < 1:1093057/114‑1 (MQ=255)
ccccGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGac > 2:1093057/1‑114 (MQ=255)
cccGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGAt > 1:1089387/1‑139 (MQ=255)
ccGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGac > 1:115187/1‑112 (MQ=255)
ccGTCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGac < 2:115187/112‑1 (MQ=255)
tCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTccc < 2:652921/80‑1 (MQ=255)
tCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTccc > 1:652921/1‑80 (MQ=255)
tCGAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTgcg > 2:1159476/1‑139 (MQ=255)
gAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc > 2:516965/1‑122 (MQ=255)
gAGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc < 1:516965/122‑1 (MQ=255)
aGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTccgcc < 2:485829/94‑1 (MQ=255)
aGCCACCATTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTccgcc > 1:485829/1‑94 (MQ=255)
ccaccaTTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc < 2:1051534/119‑1 (MQ=255)
ccaccaTTATCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc > 1:1051534/1‑119 (MQ=255)
tCGGTGGTGGTAACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTg < 2:1089387/139‑1 (MQ=255)
tggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGAt < 2:441055/96‑1 (MQ=255)
tggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGAt > 1:441055/1‑96 (MQ=255)
tggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc < 1:784469/106‑1 (MQ=255)
tggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATcagc > 2:784469/1‑106 (MQ=255)
tggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAg > 2:1293762/1‑138 (MQ=255)
tggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAg < 1:1293762/138‑1 (MQ=255)
ggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGAt > 2:195919/1‑116 (MQ=255)
ggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGAt < 1:195919/116‑1 (MQ=255)
ggtggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTc > 2:1316517/1‑139 (MQ=255)
tggtaACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAg > 1:636664/1‑139 (MQ=255)
|
TATTCAAACATCGCGGAGGCGACGCTCGGTTCCGTTATCAGCTGGTTGAGGCAGTTGCGCATATCGCCCCAGGCAATGCCGCCTTCTGAACGGCGAATACGCCCCGTCGAGCCACCATTATCGGTGGTGGTGACGATACCCGTTAAACGAGAACCCAAAGACGAAAGTGATGAGAGAACGCGTCCCAGTCCATGCCCTCCGCCGAGAGCAACGACACGATCAAGATCAGCCAGCGTACGATTGCGCATATAGTTTCCTGGAGTCAG > NC_000913/816400‑816665
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
