Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F1 I1 R1	757	76.1	3598070	93.4%	3360597	108.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,176,328	(T)_6→5	intergenic (‑7/+22)	gatZ ← / ← gatY	D‑tagatose 1,6‑bisphosphate aldolase 2, subunit/D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,176,323	0	T	.	100.0%	329.8 / NA	80	intergenic (‑2/+27)	gatZ/gatY	D‑tagatose 1,6‑bisphosphate aldolase 2, subunit/D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (43/37); total (43/37)

AGCACTTTGCGCGTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATGTTTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTC  >  NC_000913/2176197‑2176451

aGCACTTTGCGCGTGCTGTAGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAATAGACTGAACGTATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTa                                                                                                                     <  1:1173436/139‑1 (MQ=255)

     tttGCGCGTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATgg                                                                                                                >  1:1262218/1‑139 (MQ=255)

     tttGCGCGTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATgg                                                                                                                >  2:240291/1‑139 (MQ=255)

       tGCGCGTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCa                                                                                                              >  1:181846/1‑139 (MQ=255)

        gcgcGTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAg                                                                                                             <  1:506078/139‑1 (MQ=255)

         tgcgTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAgg                                                                                                            >  2:1552972/2‑139 (MQ=255)

          gcgTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGAGAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGt                                                                                                           <  2:1127268/139‑1 (MQ=255)

            gTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGc                                                                                                         >  2:1147960/1‑139 (MQ=255)

             tGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCg                                                                                                        >  2:835946/1‑139 (MQ=255)

                          aaaTGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTAtgccctgccc                                                                                           >  2:1635949/1‑139 (MQ=255)

                            aTGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTc                                                                                         >  2:819099/1‑139 (MQ=255)

                                  gcgcCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATgg                                                                                                                >  2:491478/1‑110 (MQ=255)

                                  gcgcCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATgg                                                                                                                <  1:491478/110‑1 (MQ=255)

                                    gccgcTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCcac                                                                                 <  1:1455138/139‑1 (MQ=255)

                                        cTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTAtg                                                                                                   <  1:1576560/117‑1 (MQ=255)

                                        cTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTAtg                                                                                                   >  2:1576560/1‑117 (MQ=255)

                                             aTAACCGACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCaa                                                                        <  1:1635949/139‑1 (MQ=255)

                                             aTAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCaa                                                                        >  2:924498/1‑139 (MQ=255)

                                              tAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAAt                                                                       >  1:939264/1‑139 (MQ=255)

                                                aCCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCa                                                                     <  1:1506472/139‑1 (MQ=255)

                                                        aTGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTc                                                             >  2:577238/1‑139 (MQ=255)

                                                        aTGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTc                                                             >  1:689512/1‑139 (MQ=255)

                                                        aTGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTc                                                             <  1:1147960/139‑1 (MQ=255)

                                                          gggCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCa                                                                                                              <  2:68753/88‑1 (MQ=255)

                                                          gggCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCa                                                                                                              >  1:68753/1‑88 (MQ=255)

                                                            gCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTcacca                                                         >  1:615436/1‑139 (MQ=255)

                                                                aaCAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTAtgc                                                                                                  <  1:1080945/94‑1 (MQ=255)

                                                                aaCAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTAtgc                                                                                                  >  2:1080945/1‑94 (MQ=255)

                                                                 aCAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATcg                                                    <  2:948836/139‑1 (MQ=255)

                                                                     aCTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCa                                                >  2:1334793/1‑139 (MQ=255)

                                                                        gAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTg                                             >  2:413460/1‑139 (MQ=255)

                                                                          aCATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACAt                                                      <  1:1252731/128‑1 (MQ=255)

                                                                          aCATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACAt                                                      >  2:1252731/1‑128 (MQ=255)

                                                                             tatGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGAt                                        <  1:1334793/139‑1 (MQ=255)

                                                                              atGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTca                                                            <  1:1067856/118‑1 (MQ=255)

                                                                              atGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTca                                                            >  2:1067856/1‑118 (MQ=255)

                                                                              atGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGAtt                                       >  2:406479/1‑139 (MQ=255)

                                                                               tGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAg                                                                                                             <  1:900499/68‑1 (MQ=255)

                                                                               tGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAg                                                                                                             >  2:900499/1‑68 (MQ=255)

                                                                               tGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGAttt                                      >  1:136451/1‑139 (MQ=255)

                                                                                   gATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTca                                                            <  1:249293/113‑1 (MQ=255)

                                                                                   gATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTca                                                            >  2:249293/1‑113 (MQ=255)

                                                                                   gATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGcc                                  <  1:1552972/139‑1 (MQ=255)

                                                                                    atatGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCg                                 >  1:479800/1‑139 (MQ=255)

                                                                                      atGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGcc                                  <  2:1386974/136‑1 (MQ=255)

                                                                                      atGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGcc                                  >  1:1386974/1‑136 (MQ=255)

                                                                                       tGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACt                              <  1:835946/139‑1 (MQ=255)

                                                                                       tGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACt                              <  2:181846/139‑1 (MQ=255)

                                                                                       tGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACt                              <  2:939264/139‑1 (MQ=255)

                                                                                         ttCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCg                                                                                        <  1:1662959/79‑1 (MQ=255)

                                                                                         ttCACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCg                                                                                        >  2:1662959/1‑79 (MQ=255)

                                                                                           cACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTcacc                                                          >  2:837734/1‑107 (MQ=255)

                                                                                           cACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTcacc                                                          <  1:837734/107‑1 (MQ=255)

                                                                                           cACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATcgcg                                                  >  1:298491/1‑115 (MQ=255)

                                                                                           cACCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATcgcg                                                  <  2:298491/115‑1 (MQ=255)

                                                                                            aCCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACt                                                                   <  1:928892/97‑1 (MQ=255)

                                                                                            aCCAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACt                                                                   >  2:928892/1‑97 (MQ=255)

                                                                                              cAGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAaata                       >  1:831063/1‑139 (MQ=255)

                                                                                               aGCTTTATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAaataa                      <  2:689512/139‑1 (MQ=255)

                                                                                                gCTTTATGCCGGGCAATTAACGTTCTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCa                                                                                      >  1:760842/1‑74 (MQ=255)

                                                                                                gCTTTATGCCGGGCAATTAACGTTCTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCa                                                                                      <  2:760842/74‑1 (MQ=255)

                                                                                                  tttATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAaata                       <  2:1312181/135‑1 (MQ=255)

                                                                                                  tttATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAaata                       >  1:1312181/1‑135 (MQ=255)

                                                                                                   ttATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTTGCAGCCACAATCGGCAATCACTTTGCTca                                                            >  1:1047604/1‑97 (MQ=255)

                                                                                                   ttATGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTca                                                            <  2:1047604/97‑1 (MQ=255)

                                                                                                     aTGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGA‑TTAGCCGACTGCAAATAATCCCggg               >  2:367286/1‑139 (MQ=255)

                                                                                                      tGCCGGGCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCggg               >  1:1011420/1‑139 (MQ=255)

                                                                                                           ggCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTc                                                                                         <  2:338832/60‑1 (MQ=255)

                                                                                                           ggCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTc                                                                                         >  1:338832/1‑60 (MQ=255)

                                                                                                           ggCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACt                                                                   >  2:691302/1‑82 (MQ=255)

                                                                                                           ggCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACt                                                                   <  1:691302/82‑1 (MQ=255)

                                                                                                           ggCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCg          >  2:388137/1‑139 (MQ=255)

                                                                                                           ggCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCg          >  1:1134098/1‑139 (MQ=255)

                                                                                                            gCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCgg         <  2:1134098/139‑1 (MQ=255)

                                                                                                            gCAATTAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCgg         <  2:1011420/139‑1 (MQ=255)

                                                                                                                ttAACGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGc     >  2:1420752/1‑139 (MQ=255)

                                                                                                                   aCGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTc  <  1:819099/139‑1 (MQ=255)

                                                                                                                   aCGTTTTCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTc  <  1:240291/139‑1 (MQ=255)

                                                                                                                         tCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCgg         <  2:512357/126‑1 (MQ=255)

                                                                                                                         tCATG‑TTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCgg         >  1:512357/1‑126 (MQ=255)

AGCACTTTGCGCGTGCTGTTGCGATCAAATGCCAGCGCCGCTTCGATAACCAACGGATGGGCAGAACAGACTGAACATATGCCGATATGTTCACCAGCTTTATGCCGGGCAATTAACGTTTTCATGTTTTTTCCTTGTTAAATGGCAGGTGCGTTATGCCCTGCCCTCGCAGCCACAATCGGCAATCACTTTGCTCACCACATCGCGCATTGCGGATTTAGCCGACTGCAAATAATCCCGGGGATCGGTCGCTTC  >  NC_000913/2176197‑2176451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A